PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07216

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARR-B

Protein Properties

Length: 623aa MW: 69662.4 Da PI: 6.6562

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07216	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	76	5e-24	205	258	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Ro04_G07216 205 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 258 68*****************.9*****************************8 PP
2	Myb_DNA-binding	39.4	1.4e-12	207	257	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ ++++++v+av+q G + +k+I m+ +t++++ s++qky+ Ro04_G07216 207 RVVWSVDLHQKFVKAVHQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 257 678***********************************************7 PP
3	Response_reg	65.9	1.9e-22	19	133	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT....TTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee....pklpiivvtahgeeedaleal 90 vl+vdD+p+ +++l+++l+k y +v+++ +++al ll++k+ +D+++ D++mp+mdG++ll++ e + ++ v++ ge + + + + Ro04_G07216 19 VLVVDDDPTWLKILEKMLKKCSY-DVTTCGLARDALYLLRDKKdgYDIVVSDVNMPDMDGFKLLEHVgLEMDlpviINPTYAVMSVDGETSRVMKGV 114 89*******************.***********888889******************66655544434555689********* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ ++el++ Ro04_G07216 115 QHGACDYLLKPIRMKELRN 133 **************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YDVTTCGLAR DALYLLRDKK 60 DGYDIVVSDV NMPDMDGFKL LEHVGLEMDL PVIINPTYAV MSVDGETSRV MKGVQHGACD 120 YLLKPIRMKE LRNIWQHVFR KKIHEIRDIE GPESIEGIQL TRNGSDLYDD GYFLGADDLS 180 SSRKRKDIEN KYDDKDFGDS SSTKKARVVW SVDLHQKFVK AVHQIGFDKV GPKKILDLMN 240 VPWLTRENVA SHLQKYRLYL SRLQKENDLK SSFGGMKHSD YPSKDPQGGI FGLQNSINIQ 300 QNDVTNCSYR FSGNNLVAQS VDSKSHEDDV KGVVPQPVAE PKRGSARSIP DSLKCRSSQV 360 DSSHAYAETK KGLIGNASDS QKIRSSQMGV DHSFASVESE LNFTAFGSTM PTKFSVTQMK 420 QEHKPVIQLD NGFNKPQLPG PQHHLQADVL QSVTSISSRP SILDGETSRP IKNKPSQAVF 480 RNNHVSHVSP PLSAADSFSE QTKSCVVDQG FDPIFTSTLN MKNQGFHLSN LPNFEAAQRN 540 LFFGSGSSFP SLDDDLQFCL YPGDSFGMNL GEYSDPEVPT QLYEALRFGC ENPCESSEYS 600 LADQELSRTT RKRKPDCPRI LIA

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MESSFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YDVTTCGLAR DALYLLRDKK  60
DGYDIVVSDV NMPDMDGFKL LEHVGLEMDL PVIINPTYAV MSVDGETSRV MKGVQHGACD  120
YLLKPIRMKE LRNIWQHVFR KKIHEIRDIE GPESIEGIQL TRNGSDLYDD GYFLGADDLS  180
SSRKRKDIEN KYDDKDFGDS SSTKKARVVW SVDLHQKFVK AVHQIGFDKV GPKKILDLMN  240
VPWLTRENVA SHLQKYRLYL SRLQKENDLK SSFGGMKHSD YPSKDPQGGI FGLQNSINIQ  300
QNDVTNCSYR FSGNNLVAQS VDSKSHEDDV KGVVPQPVAE PKRGSARSIP DSLKCRSSQV  360
DSSHAYAETK KGLIGNASDS QKIRSSQMGV DHSFASVESE LNFTAFGSTM PTKFSVTQMK  420
QEHKPVIQLD NGFNKPQLPG PQHHLQADVL QSVTSISSRP SILDGETSRP IKNKPSQAVF  480
RNNHVSHVSP PLSAADSFSE QTKSCVVDQG FDPIFTSTLN MKNQGFHLSN LPNFEAAQRN  540
LFFGSGSSFP SLDDDLQFCL YPGDSFGMNL GEYSDPEVPT QLYEALRFGC ENPCESSEYS  600
LADQELSRTT RKRKPDCPRI LIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-124	ARR-B family protein