PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07200

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 389aa MW: 44821.1 Da PI: 6.1665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07200	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.2	3.9e-27	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf r+p++C++kw+nl k++kk k+++++ s +++y++++e Ro04_G07200 73 WVQDETRSLIAMRREMDGLFNTSKSNKHLWEQISAKMREKGFDRNPNMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 154 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MYLSEKPHPI DFHKGEDVSE DMMIEVVSNE DLCQTHHPNH QPQQQQQILL LGDSSGSGED 60 HEAKPQKKRA ETWVQDETRS LIAMRREMDG LFNTSKSNKH LWEQISAKMR EKGFDRNPNM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILRER NKNAQYKSPT LPKVDSFMQF 180 SDKGIEDANI SFAHVEANAR PTLNLETGLD RDGHPLAITA ADAVAVNGVT PWNWRETPEN 240 GKSIKLKRGE NQSYGGRVIV VTWGDYTRRI GIDGSADAIK EAIKSAFRLR TKRAFWLEDE 300 DQIVRSLDRD MPLGNYTLHL DEGLAVKVCL YDEADNITVH TEDKVFFTED DYHEFLTRRG 360 WTCLREFDGY RNIENMDDLR PGAIYRGVS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MYLSEKPHPI DFHKGEDVSE DMMIEVVSNE DLCQTHHPNH QPQQQQQILL LGDSSGSGED  60
HEAKPQKKRA ETWVQDETRS LIAMRREMDG LFNTSKSNKH LWEQISAKMR EKGFDRNPNM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILRER NKNAQYKSPT LPKVDSFMQF  180
SDKGIEDANI SFAHVEANAR PTLNLETGLD RDGHPLAITA ADAVAVNGVT PWNWRETPEN  240
GKSIKLKRGE NQSYGGRVIV VTWGDYTRRI GIDGSADAIK EAIKSAFRLR TKRAFWLEDE  300
DQIVRSLDRD MPLGNYTLHL DEGLAVKVCL YDEADNITVH TEDKVFFTED DYHEFLTRRG  360
WTCLREFDGY RNIENMDDLR PGAIYRGVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein