PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07111

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 304aa MW: 33553.8 Da PI: 8.5485

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.4e-41	43	119	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls ++eyhrrhkvCe hsk+p+v+++g+e+rfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+q Ro04_G07111 43 CLVDGCNSDLSVCREYHRRHKVCELHSKTPKVTIQGQEKRFCQQCSRFHSLGEFDEGKRSCRRRLAGHNKRRRKPQL 119 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MAENSKPSFL SSKGKLKNPG LSMMNASSKR GRRANAVIQV ASCLVDGCNS DLSVCREYHR 60 RHKVCELHSK TPKVTIQGQE KRFCQQCSRF HSLGEFDEGK RSCRRRLAGH NKRRRKPQLE 120 PMPINSGAFL SDYQGTIFSP FISPQIYPTN AAMNSSGDEV PIDHHSQVSV SRRNSFPGSM 180 PCYRYREGIH SMLSEASSVC QPLLDTDFAL GNYGNSQKMF SNEFFGGNVE SSCARSLLSY 240 TSAVQEETGL SLTGPTSSIC SAQSFIPTLH HYNDLGMQGE AVISNLVSDG SSNSNLLCIQ 300 DMFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	117	KRSCRRRLAGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-45	SBP family protein