PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G06410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 489aa    MW: 51617.6 Da    PI: 8.3689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G06410genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.5e-124873227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C++++rtG+C yG+rC+++H++
  Ro04_G06410 48 DEADCSYYLRTGICGYGARCRYNHPR 73
                 6799********************96 PP

2zf-CCCH391.3e-1295119327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtCk+G++Ck++H++
  Ro04_G06410  95 QPVCQYYMRTGTCKFGATCKYHHPK 119
                  689********************96 PP

3zf-CCCH36.67.5e-12139165127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++ +tG+Ck+G++CkF+H++
  Ro04_G06410 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165
                  5789*********************97 PP

4zf-CCCH35.81.3e-11302327126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++rtG Ck+G++C+++H+
  Ro04_G06410 302 PGQAECQYYLRTGDCKFGSSCRYHHP 327
                  5789*********************8 PP

5zf-CCCH34.43.7e-11363386427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  +lC ++a+ G Ck+G+ CkF H++
  Ro04_G06410 363 PLCTHYAQRGACKFGSACKFDHPM 386
                  89********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MERYGRNTDG SQADPSPEWT APGPETGLEE SMWQLSLGPG ESYPERPDEA DCSYYLRTGI  60
CGYGARCRYN HPRDRSAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ  120
GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTTGI QPQVPSQAHQ  180
APIVPAPTLY QTVQSPSVSS QSYGAVMVAR PPLLPSSYFQ SPYGPMLIPP GMVPFSGWSP  240
YPAPASPLPS PSTQTAVGSG TIYGINQLSP SAPAYTGIFP TVPFSLGLPT TSQKEQSHPE  300
RPGQAECQYY LRTGDCKFGS SCRYHHPAEV VAPKTPVVLS SIGLPSRPSC CLMRSNSLAT  360
GAPLCTHYAQ RGACKFGSAC KFDHPMGTLS YSPSASSLTD MPVAPYPVGS SIGTLAPSSS  420
SSELRPELNS GTSKDSVSAR TSSSLSTVSG SVGSTVSKGG VAHLGGQQSA KGSGSSTTSD  480
NSTESRSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-148C3H family protein