PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G06410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 489aa MW: 51617.6 Da PI: 8.3689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.5e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+++H++ Ro04_G06410 48 DEADCSYYLRTGICGYGARCRYNHPR 73 6799********************96 PP | |||||||
2 | zf-CCCH | 39 | 1.3e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Ro04_G06410 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.5e-12 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ Ro04_G06410 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 302 | 327 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G++C+++H+ Ro04_G06410 302 PGQAECQYYLRTGDCKFGSSCRYHHP 327 5789*********************8 PP | |||||||
5 | zf-CCCH | 34.4 | 3.7e-11 | 363 | 386 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Ro04_G06410 363 PLCTHYAQRGACKFGSACKFDHPM 386 89********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence |
MERYGRNTDG SQADPSPEWT APGPETGLEE SMWQLSLGPG ESYPERPDEA DCSYYLRTGI 60 CGYGARCRYN HPRDRSAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTTGI QPQVPSQAHQ 180 APIVPAPTLY QTVQSPSVSS QSYGAVMVAR PPLLPSSYFQ SPYGPMLIPP GMVPFSGWSP 240 YPAPASPLPS PSTQTAVGSG TIYGINQLSP SAPAYTGIFP TVPFSLGLPT TSQKEQSHPE 300 RPGQAECQYY LRTGDCKFGS SCRYHHPAEV VAPKTPVVLS SIGLPSRPSC CLMRSNSLAT 360 GAPLCTHYAQ RGACKFGSAC KFDHPMGTLS YSPSASSLTD MPVAPYPVGS SIGTLAPSSS 420 SSELRPELNS GTSKDSVSAR TSSSLSTVSG SVGSTVSKGG VAHLGGQQSA KGSGSSTTSD 480 NSTESRSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-148 | C3H family protein |