PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G06409
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 335aa    MW: 36806.5 Da    PI: 4.6142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G06409genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173280355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdps+   + r++lg+f+ta eAa a+++a++ ++g
  Ro04_G06409 32 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAIEAALAYDKAALDMKG 80
                 56******.**********965...5***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MPISTSKALE KPLTQSGERS RGRRKQAEPG RFLGVRRRPW GRYAAEIRDP STKERHWLGT  60
FDTAIEAALA YDKAALDMKG AEARTNFIYS DNSTFHSLLT PFDVQTLLPQ QSLEFFTSTS  120
TQTPKQQPTN QNSPPGQSSM FYQNEKNLNI IGSNEKTSFD DFFFSNNISS DNSGYLGCIV  180
PDNCLRPPSD IPKSSDFSTT ALNIDHQNCS FTITANSSIE AIPHCDQSSS TATTFPLDVM  240
NVPASSMASS NPGGDQLSCF DGFSHGFWGD NQQYSSWDSS EFSAMVDNNP LMIEDGCNIG  300
ALYPILENPS TSFSCSPSVH PPFGDVAIDF GHSLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.17e-42ERF family protein