PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G06368
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 328aa    MW: 35719.6 Da    PI: 7.7001
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G06368genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-073760326
                 S---SGGGGTS--TTTT.T-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGd.rCkFaHg 26
                 ++ C+++ + G+Ck+Gd +CkF H+
  Ro04_G06368 37 RPVCKYWIQ-GYCKFGDeNCKFLHS 60
                 899******.******857*****7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MELDTGVTNN RVFLRKADHR PAQRATTSSQ PQTGKSRPVC KYWIQGYCKF GDENCKFLHS  60
WSAGDDVSLV ATLEGHKKSV TGYAEPWVVV GLPNAVMAFN THQPDSELVT LRLGTAANFG  120
QVYALAGGNA MLFAGTHDGS ILTWSCNPAT NLFEPAAPLR GHTHGVVSLA VGGGLLYSGS  180
IDSSIKVWSL ENLQCVQTMR DGHAKVVMSL VCCSDQFLFS CSLDQKLKIW FPNDQSGNKN  240
LELTYTHTEK DGLLALCGTH DSEGNAVMLC SCNDDTLRLY DLPSFSERGR IFSKGEIRAI  300
QAGPQGLFFT GHGTGPVRVW KLMKLPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.12e-95C3H family protein