PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G06346

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 820aa MW: 91643.9 Da PI: 6.8482

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G06346	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.1	1.9e-36	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+ C +d++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr++++ Ro04_G06346 141 RCQVPTCGVDIKELKGYHRRHRVCLACANASTVILDGETKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRRRRKP 218 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence
MERIPSPSSN QSQRPRLDQP RVSQLLESQP PMAADDGSTV WDWGDLLDFT VDDDLEISWG 60 SAHRPDPPAA PEDPPEIPNP SPIPARTRKR DPRLACSNFL AGHVPCACPE VDEKMMELEE 120 EEAGHGKKRV RTVRAPPGTA RCQVPTCGVD IKELKGYHRR HRVCLACANA STVILDGETK 180 RYCQQCGKFH VLPDFDEGKR SCRRKLERHN NRRRRRKPSD PKGGKESQGE IHSEDENHDG 240 DAGEESLQLS SQMNEKEDLL ESEGGGISAL CSVPNSQNVG SDGGVSILTS GDTQMDGRKH 300 NSNHSLSPPQ CDNKSVYSSM CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY 360 IRPGCIILTV FIAMPNFMWM KLLDDPASYL HDFVIVPGRM LSGRGNMLVY LNDMVFRVAK 420 DGTSVIKAKA EVRAPRLHYI HPTCFEAGKP MEFFACGSNL LQPKFRFLVS FSGKYLAYNY 480 NPESSHSQIE GDSTAGNLDH QLYKIHVPHT EASIFGPAFI EVENESGLSN FLPVLVGNKE 540 ICAEMETIQK RFEESLFLQG SSHISSSGSL LNSCEASSLR HTAFSEVILD IAWLLRKPPS 600 ENVQQIMTST QAQRFNYLLN LLIFFKSTTI LEKVLENLKS LMDSVEMNSP HSGTSEADMR 660 LLQKYMNHAH DILHRKFQNS GDLVVQPGSL VQKEDLISQS LSFQRKQLFP FRTQDTEITV 720 DGKLDVILGS TSNERSETLP LINKKASMKA NLIQQWPREA NCGNSSGEGL SSRSSGTFFG 780 FRPTIYVISA AAMCLGICAV VFHPHKVGEF AVTIRRCLSY

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence

MERIPSPSSN QSQRPRLDQP RVSQLLESQP PMAADDGSTV WDWGDLLDFT VDDDLEISWG  60
SAHRPDPPAA PEDPPEIPNP SPIPARTRKR DPRLACSNFL AGHVPCACPE VDEKMMELEE  120
EEAGHGKKRV RTVRAPPGTA RCQVPTCGVD IKELKGYHRR HRVCLACANA STVILDGETK  180
RYCQQCGKFH VLPDFDEGKR SCRRKLERHN NRRRRRKPSD PKGGKESQGE IHSEDENHDG  240
DAGEESLQLS SQMNEKEDLL ESEGGGISAL CSVPNSQNVG SDGGVSILTS GDTQMDGRKH  300
NSNHSLSPPQ CDNKSVYSSM CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ASMPVELEGY  360
IRPGCIILTV FIAMPNFMWM KLLDDPASYL HDFVIVPGRM LSGRGNMLVY LNDMVFRVAK  420
DGTSVIKAKA EVRAPRLHYI HPTCFEAGKP MEFFACGSNL LQPKFRFLVS FSGKYLAYNY  480
NPESSHSQIE GDSTAGNLDH QLYKIHVPHT EASIFGPAFI EVENESGLSN FLPVLVGNKE  540
ICAEMETIQK RFEESLFLQG SSHISSSGSL LNSCEASSLR HTAFSEVILD IAWLLRKPPS  600
ENVQQIMTST QAQRFNYLLN LLIFFKSTTI LEKVLENLKS LMDSVEMNSP HSGTSEADMR  660
LLQKYMNHAH DILHRKFQNS GDLVVQPGSL VQKEDLISQS LSFQRKQLFP FRTQDTEITV  720
DGKLDVILGS TSNERSETLP LINKKASMKA NLIQQWPREA NCGNSSGEGL SSRSSGTFFG  780
FRPTIYVISA AAMCLGICAV VFHPHKVGEF AVTIRRCLSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	215	RRKLERHNNRRRR
2	203	217	RRKLERHNNRRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein