PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02750

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 351aa MW: 39267 Da PI: 8.2781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02750	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	265	290	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++++G C+y d C+FaHg Ro04_G02750 265 FKTELCNKWQESGDCPYKDHCQFAHG 290 79***********************9 PP
2	zf-CCCH	18.5	3.6e-06	303	327	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H Ro04_G02750 303 YKTEVCRMVLAGDVCPYGHRCHFRH 327 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSRYDFSASG VELEPRMQND AAFSTASARI GTSTMSSSQR QPLGVAHNSL YSSIFGPKPS 60 VTPYGVQSNS DTSQSYRNKL YESLLIQNRQ ELVNRHSLCL KRLHEAAEEA DTLRLENSHL 120 RNVNFELNKQ LSLLIHASIQ KEIGSSSSAQ RSPFGIVNGI RGLSIDEKSA EEEELSDQSP 180 TSVVESEDAE NVDVERFSLP KSISVRSNGY VKLPPATAAT NAARTRTAAR SRTAKAVNAS 240 QKVYVHGGMK EEVPLELEVY NQGMFKTELC NKWQESGDCP YKDHCQFAHG VEELRPVIRH 300 PRYKTEVCRM VLAGDVCPYG HRCHFRHALT EEEKKFAGGN NKPRPIRYLY K

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSRYDFSASG VELEPRMQND AAFSTASARI GTSTMSSSQR QPLGVAHNSL YSSIFGPKPS  60
VTPYGVQSNS DTSQSYRNKL YESLLIQNRQ ELVNRHSLCL KRLHEAAEEA DTLRLENSHL  120
RNVNFELNKQ LSLLIHASIQ KEIGSSSSAQ RSPFGIVNGI RGLSIDEKSA EEEELSDQSP  180
TSVVESEDAE NVDVERFSLP KSISVRSNGY VKLPPATAAT NAARTRTAAR SRTAKAVNAS  240
QKVYVHGGMK EEVPLELEVY NQGMFKTELC NKWQESGDCP YKDHCQFAHG VEELRPVIRH  300
PRYKTEVCRM VLAGDVCPYG HRCHFRHALT EEEKKFAGGN NKPRPIRYLY K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	5e-88	C3H family protein