PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 351aa    MW: 39267 Da    PI: 8.2781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02750genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-11265290126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ ++++G C+y d C+FaHg
  Ro04_G02750 265 FKTELCNKWQESGDCPYKDHCQFAHG 290
                  79***********************9 PP

2zf-CCCH18.53.6e-06303327125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte Cr  +++  C+yG rC+F H
  Ro04_G02750 303 YKTEVCRMVLAGDVCPYGHRCHFRH 327
                  9**********55**********88 PP

Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MSRYDFSASG VELEPRMQND AAFSTASARI GTSTMSSSQR QPLGVAHNSL YSSIFGPKPS  60
VTPYGVQSNS DTSQSYRNKL YESLLIQNRQ ELVNRHSLCL KRLHEAAEEA DTLRLENSHL  120
RNVNFELNKQ LSLLIHASIQ KEIGSSSSAQ RSPFGIVNGI RGLSIDEKSA EEEELSDQSP  180
TSVVESEDAE NVDVERFSLP KSISVRSNGY VKLPPATAAT NAARTRTAAR SRTAKAVNAS  240
QKVYVHGGMK EEVPLELEVY NQGMFKTELC NKWQESGDCP YKDHCQFAHG VEELRPVIRH  300
PRYKTEVCRM VLAGDVCPYG HRCHFRHALT EEEKKFAGGN NKPRPIRYLY K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-88C3H family protein