PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02673
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 346aa    MW: 38514.7 Da    PI: 4.6907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02673genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17116165154
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                  s ++GVr++k +g+W+AeIrd +     + +r++lg++ tae+A ka+++ r+ +e
  Ro04_G02673 116 SPFRGVRQRK-WGKWAAEIRDpF-----SrTRVWLGTYNTAEDASKAYEERRLHFE 165
                  679******9.**********55.....34******************99887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MPEPRNPRLN QRNGLKKSKR EEKFPAEVPK MVRKVRIICS DPDATDDSSS EDEGIERKFH  60
KRMVKEITLP FNFTRPSKLV VEPESSCQDS NNGIKTPTLK PKLRVLAKTS KKSSNSPFRG  120
VRQRKWGKWA AEIRDPFSRT RVWLGTYNTA EDASKAYEER RLHFEKMLSL ATASEASASS  180
EKSNTTTCSA VVSQSVNNAQ HEQPAVSSEE DSDCVYSQRS PASVLDVETC ASNNIHNGGD  240
LENEVVGTNA LGELPIPSDL GFMDEQPFGP ELNFDGIEPL SFHAEIDSLL LDDIGQFFNE  300
FGSIDDVHIG GFEGNEPSNL PDCDFGDLGK DDFACWMNET SNIQCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.19e-36ERF family protein