PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02640

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 385aa MW: 42352.9 Da PI: 9.0645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02640	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	206	261	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Ro04_G02640 206 KQRRNWSPELHRRFLHALQQLGGSHTATPKQIRELMKVDGLTNDEVKSHLQKYRLH 261 79****************************************************97 PP
2	Myb_DNA-binding	44	5.1e-14	208	259	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r +W++e++ ++++a +qlGg t+k I + m g+t ++ks++qky+ Ro04_G02640 208 RRNWSPELHRRFLHALQQLGGShtaTPKQIRELMKvDGLTNDEVKSHLQKYR 259 679***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MESTEEMQAS KLGFRDYVKA LEVERQKIQV FQRELPLCLE LVTQAIERCK QELSDNSTEY 60 RHGQSECSEQ TSSEGHAFAE FIPLKRTSSS DSDNDEEVEE PDHQPKINDK DKSISGDKKK 120 SDWLRSVQLW NTTPDLPQKE ELPRKALVVE VKRNGGAFQP FQREKSIGKT NGAVAKSPAS 180 APSTSSTADG VSGGNSKKED KEGQRKQRRN WSPELHRRFL HALQQLGGSH TATPKQIREL 240 MKVDGLTNDE VKSHLQKYRL HTRRPTPTIH SNNNKERAPQ FVVVGGIWVP PQDYNAAVAA 300 ANTASGEAAR VAAAAANGIY APVASTPSTV TQVSPTAMHR PRPKKPEPSS HSEERASHSG 360 EGRGHSNSTA TSPSSTHTPA SPTVF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MESTEEMQAS KLGFRDYVKA LEVERQKIQV FQRELPLCLE LVTQAIERCK QELSDNSTEY  60
RHGQSECSEQ TSSEGHAFAE FIPLKRTSSS DSDNDEEVEE PDHQPKINDK DKSISGDKKK  120
SDWLRSVQLW NTTPDLPQKE ELPRKALVVE VKRNGGAFQP FQREKSIGKT NGAVAKSPAS  180
APSTSSTADG VSGGNSKKED KEGQRKQRRN WSPELHRRFL HALQQLGGSH TATPKQIREL  240
MKVDGLTNDE VKSHLQKYRL HTRRPTPTIH SNNNKERAPQ FVVVGGIWVP PQDYNAAVAA  300
ANTASGEAAR VAAAAANGIY APVASTPSTV TQVSPTAMHR PRPKKPEPSS HSEERASHSG  360
EGRGHSNSTA TSPSSTHTPA SPTVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-87	G2-like family protein