PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02638

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 288aa MW: 32443.8 Da PI: 7.044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02638	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	105	124	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp Cgk+F+r n++ H+ Ro04_G02638 105 FSCPVCGKTFNRFNNMQMHM 124 89*****************9 PP
2	zf-C2H2	14	0.00015	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Ro04_G02638 190 FGCRKCGKPFAVRGDWRTHEKNC 212 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MYHQENEDDL VFLTLGLPGQ RVHHHQQSSS SSTTQFHHQN PNYNADHEDN GVTVALHIGQ 60 PISSSGPSII SLGSNNNNIC NSNVHIEGQY WIPSPAQILV GPTQFSCPVC GKTFNRFNNM 120 QMHMWGHGSQ YRKGPESLRG SKPSSSILRL PCYCCAEGCR NNIDHPRSRP LKDFRTLQTH 180 YKRKHGTKPF GCRKCGKPFA VRGDWRTHEK NCGKLWFCVC GSDFKHKRSL KDHVRSFGDG 240 HAQYAVELCA EAEDEEEDPE DDDDDNDERD VNNGGGQHHG IGSVLFNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-110	C2H2 family protein