PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 464aa    MW: 52108 Da    PI: 4.7251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02630genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.81.6e-30571961128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 
                  lp+G++F+Ptd+e++++ L+k  +g+   +++ +  i+++d    ++ ++P++Lp  +k++ +  +fF+ + k+y+tg+rk+r+++     + +W++t
  Ro04_G02630  57 LPKGVKFDPTDQEIIWHLLAKTGAGDLrpHPFIDSfITDFDgdegVLCSHPKKLP-GIKQDGSVSHFFHVAIKAYNTGTRKRRKIHdddygDIRWHKT 153
                  799************998888876665564443333777765666999*******.777888899******************85545544667**** PP

          NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  g++k+v+  +g + g+kk++v+y   ++  k+ekt+Wvmh+y+l
  Ro04_G02630 154 GRTKPVIL-DGVQRGCKKIMVLYtsMAKGGKAEKTNWVMHQYHL 196
                  ********.99************4434666778*********98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MSGPSWLVDK KRIATKIRNA STSDPGRINW QSNPTRACPN CQYMIDNSDV AQEWPGLPKG  60
VKFDPTDQEI IWHLLAKTGA GDLRPHPFID SFITDFDGDE GVLCSHPKKL PGIKQDGSVS  120
HFFHVAIKAY NTGTRKRRKI HDDDYGDIRW HKTGRTKPVI LDGVQRGCKK IMVLYTSMAK  180
GGKAEKTNWV MHQYHLGTDE DEKDGEYVIS KIYYQQQQVK QADKTDQNSP ESIDPVIQAD  240
PVTPKSVIPE PLDPSFNLGE DTPAACTEPK SVTPEPPRPE RRHSDFGLGE ATPVASTDPF  300
LLIQLKHPDM DCVEDEVHPE YEKSGYHDQH SVENPNDEAI NSNVNNTQED PKWWDSESQY  360
LLDSQQLVEG LSLCDDLLQS QSPTRGGHEN GEPAQVKPRL ADYAKLGAED LKKDLEECQN  420
IVLDPANMEL ETPPDFRLSQ LEFESQESFI SWGGKVADLG VLRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-165NAC family protein