PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02528

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 499aa MW: 57491.9 Da PI: 7.9128

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02528	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95	3.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS LCdaeva+i+fss+gklye++s Ro04_G02528 9 KRIENKINRQVTFAKRRNGLLKKAYELSLLCDAEVALIVFSSRGKLYEFAS 59 79***********************************************86 PP
2	SRF-TF	88.1	4.8e-28	269	315	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gk++ Ro04_G02528 269 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSNKGKVF 315 79*******************************************96 PP
3	K-box	67.2	5.6e-23	129	193	36	100
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 Rh+lGe+L+ L +++Lq+Le+qL++slk++Rs++n+++l+q+++lq ke++l e+n +L++klee Ro04_G02528 129 RHFLGEELDHLGINDLQELENQLDTSLKRVRSTQNQHMLDQLSDLQTKEEMLLEANDELSRKLEE 193 9*************************************************************987 PP
4	K-box	93.9	2.6e-31	339	428	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + +++ e+a+Lk ++e Lqr++ h+lGedL+sLslke+q+LeqqL++++k++Rs++n+l+ e+i+elq+kek++q +n+ L kk++e Ro04_G02528 339 FESQGNWTFEYARLKVKVELLQRNLSHYLGEDLDSLSLKEIQSLEQQLDTAIKQVRSRRNQLMNESISELQRKEKAMQGQNNLLAKKIKE 428 456789*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSLLCD AEVALIVFSS RGKLYEFASG 60 PSMEKTIERY QRYTYAALEA DRPAQDEQAP RLRGAKSESG GPTTYAELDH MKNTGHHCSH 120 MEFYLAFFRH FLGEELDHLG INDLQELENQ LDTSLKRVRS TQNQHMLDQL SDLQTKEEML 180 LEANDELSRK LEESNAALQR SWKAQEPNIP ISLQSSTAQS DQGFFVVPVQ CNNNTLQIGH 240 SREVTREVNV ATSTQTRSAF VPGGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD 300 AQVALIVFSN KGKVFDMEHI LERYERYSYS ERQLVEPDFE SQGNWTFEYA RLKVKVELLQ 360 RNLSHYLGED LDSLSLKEIQ SLEQQLDTAI KQVRSRRNQL MNESISELQR KEKAMQGQNN 420 LLAKKIKEKE KNEAAAQEVH NWEQQQQNHG LNLLPQVPLP WLNMGGTQQN DQFLQVRRNQ 480 LELTLEPSLY SCHLGCFAS

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSLLCD AEVALIVFSS RGKLYEFASG  60
PSMEKTIERY QRYTYAALEA DRPAQDEQAP RLRGAKSESG GPTTYAELDH MKNTGHHCSH  120
MEFYLAFFRH FLGEELDHLG INDLQELENQ LDTSLKRVRS TQNQHMLDQL SDLQTKEEML  180
LEANDELSRK LEESNAALQR SWKAQEPNIP ISLQSSTAQS DQGFFVVPVQ CNNNTLQIGH  240
SREVTREVNV ATSTQTRSAF VPGGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD  300
AQVALIVFSN KGKVFDMEHI LERYERYSYS ERQLVEPDFE SQGNWTFEYA RLKVKVELLQ  360
RNLSHYLGED LDSLSLKEIQ SLEQQLDTAI KQVRSRRNQL MNESISELQR KEKAMQGQNN  420
LLAKKIKEKE KNEAAAQEVH NWEQQQQNHG LNLLPQVPLP WLNMGGTQQN DQFLQVRRNQ  480
LELTLEPSLY SCHLGCFAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	5e-92	MIKC_MADS family protein