PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00454

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 584aa MW: 62661.1 Da PI: 9.7027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00454	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Ro04_G00454 60 FICEVCNKGFQREQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	13.1	0.00028	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Ro04_G00454 136 WKCEKCSKRYAVQSDWKAHSKTC 158 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MAAASSSMAF FGNSREENHN QMTLQQPPPA SSTASIATGA PTAPPPQKKR RNQPGNPSKF 60 ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTNKEPKRKV YLCPEPTCVH HDPSRALGDL 120 TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH 180 RAFCDALAQE SARHPSSLSA MATSTHLYPG NNQMMSLGLS QIGGGSSLPP NNMLRLGTAG 240 AGGAAKFEHL MNPSSFGQGQ PMPNSSSSFF NQGFQDQQQS LNGQFSANKS LHGLMQLPDL 300 QSHTTSNNSP SSTTTAAGSL FNLGFFSNNN SDHHQFSDGN GGSQGTTLFP NSMGDHIGSG 360 LPSSLFGNSL QNENMNGAHM SATALLQKAA QMGSTTSTES SSLLRGLAGS TSSSTRAGAK 420 SISGRQLVSS NSNVGGVSIS RESSSGGEHE QHLRSQQQQQ QQHVENENHH LQGLIMNSLA 480 NGNSSAASIF GSAGDHHNNF GTHGFAIGST TRVSLMDQQQ HNNTNFSNVD EAKLTLDFLG 540 VGGIVRNMGG GGYEHRGINM SSLDPDLKST QQPSQPYGGT STLQ

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MAAASSSMAF FGNSREENHN QMTLQQPPPA SSTASIATGA PTAPPPQKKR RNQPGNPSKF  60
ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTNKEPKRKV YLCPEPTCVH HDPSRALGDL  120
TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH  180
RAFCDALAQE SARHPSSLSA MATSTHLYPG NNQMMSLGLS QIGGGSSLPP NNMLRLGTAG  240
AGGAAKFEHL MNPSSFGQGQ PMPNSSSSFF NQGFQDQQQS LNGQFSANKS LHGLMQLPDL  300
QSHTTSNNSP SSTTTAAGSL FNLGFFSNNN SDHHQFSDGN GGSQGTTLFP NSMGDHIGSG  360
LPSSLFGNSL QNENMNGAHM SATALLQKAA QMGSTTSTES SSLLRGLAGS TSSSTRAGAK  420
SISGRQLVSS NSNVGGVSIS RESSSGGEHE QHLRSQQQQQ QQHVENENHH LQGLIMNSLA  480
NGNSSAASIF GSAGDHHNNF GTHGFAIGST TRVSLMDQQQ HNNTNFSNVD EAKLTLDFLG  540
VGGIVRNMGG GGYEHRGINM SSLDPDLKST QQPSQPYGGT STLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	2e-99	C2H2 family protein