PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00448

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 330aa MW: 37037.5 Da PI: 8.5587

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00448	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	22	75	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l++m+vkgLt++hvkSHLQ++R+ Ro04_G00448 22 PRLRWTPELHHCFVQAIERLGGHKKATPKLVLQIMDVKGLTISHVKSHLQMFRS 75 8****************************************************7 PP
2	Myb_DNA-binding	49.6	9.3e-16	23	74	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++ +v+a+++lGg+ t+k++ + m kg+t ++ks++q+++ Ro04_G00448 23 RLRWTPELHHCFVQAIERLGGHkkaTPKLVLQIMDvKGLTISHVKSHLQMFR 74 89***********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MSTSSSCGRN GAVRPYIRSK VPRLRWTPEL HHCFVQAIER LGGHKKATPK LVLQIMDVKG 60 LTISHVKSHL QMFRSMRGDL GRAPDGSFTQ QRKQSFEEHD DGCLDHEVNV MGFLSPSSQP 120 IRESDPQVIY SVPRRSKPIR ESDPQALYSN PTRSKRAKIE TTSCSISERQ RQRQQQWSQT 180 THETTPYGYD DYGLGLVLAN GEIIKDPSLA ALSLPQQHHY LYNFNPFFKS ALQESEFFKI 240 NKLEDEKHDP KMHKQDNRGR AHTEGGGCQL SLSLSLPHPS SHMSNASSSE EMSGVFSSYP 300 GSSFNYKDCS TFSSANCSVD LNLSIALCGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-32	G2-like family protein