PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00252
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 696aa    MW: 75355.1 Da    PI: 7.3914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00252genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.5e-24232282152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQ 
  Ro04_G00252 232 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQE 282
                  79*******************.****************************94 PP
2Myb_DNA-binding34.64.4e-11234281145
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g++++++ s++q
      Ro04_G00252 234 RVVWSVELHQQFVSAVNQLGLDkaVPKRILELMNvPGLSRENVASHLQ 281
                      678********************************************9 PP
3Response_reg79.71e-26481561109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+q+l++  y +v+ ++++++al+ l+ek+  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a g  + + + ++ Ga 
   Ro04_G00252  48 VLVVDDDTTCLAILEQMLRRCLY-QVTLCSQATDALNRLREKKgyFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRTSAVMKGIRHGAC 142
                   89*********************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Ro04_G00252 143 DYLIKPIREEELKN 156
                   ***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MAALQSVVQS CLSTTASSFG SCKGGGASSS SAANVMAVPD QFPAGLRVLV VDDDTTCLAI  60
LEQMLRRCLY QVTLCSQATD ALNRLREKKG YFDVVLSDVH MPDMDGFKLL EHIGLEMDLP  120
VIMMSADGRT SAVMKGIRHG ACDYLIKPIR EEELKNIWQH VARKKLNENK ELEYSGSLED  180
NDRHKRGSND VEYTSSVNEG TEGIVKSQKK RSTAKEDEDG DMENDDMSTS KKPRVVWSVE  240
LHQQFVSAVN QLGLDKAVPK RILELMNVPG LSRENVASHL QEQVNVQKFR LYLKRISVEQ  300
QQSANAFCGP VESNVKLGPH GNRFDIQALA ASGQIPPQTL AALQAELLGQ PVGNVVSTID  360
QPAVLHASLQ RPKRAPVDHG VAFGQPLIKS QSNVSIPFPQ CIISAEDASS GGPWRSNSLG  420
TVAPSSNLGG LSPQNSNMFM DILQQEQRSQ QKTHQQSVLT EPIRAINVQP SCLVVPSHSS  480
ASFQAGNSPA SVNQSCSFNR STAIDYSVLS TQSKISNGNL KTPGILSGFT ATGSLSTPSC  540
SVIAESINSP QNSTVTYSDA RQLPGRLHNA SNIQDLYVPK SGEMLDQGVY RNLGFVGKGT  600
RIPSRFAVDE FELKSNLNHG NIHVESSGIP VKQEPSMGFV DYAKGSPIFQ QFSSSDLMSC  660
LHQTHRAASL LAETKKLRIY LIVGAENPGK AGKLGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-112ARR-B family protein