PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G00128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 335aa MW: 37501.5 Da PI: 4.41 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.8e-19 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa+ k Ro04_G00128 87 KKRRLTVDQVQFLEKNFELENKLEPDRKGQLAKELGLEPRQVAIWFQNRRARFK 140 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.9 | 3.7e-40 | 87 | 178 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv++LE++Fe e+kLep+rK +la+eLgl+prqva+WFqnrRAR+ktkqlEkdy++L++++++lk ++++L k++ +L++e+++ Ro04_G00128 87 KKRRLTVDQVQFLEKNFELENKLEPDRKGQLAKELGLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASFEKLKGDHDNLLKQNGNLKNEIDS 178 9**************************************************************************************99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence |
MVGGKRCGAS SEMNAIFHNE RLPCSSDVLE SLWIPTSSSS FHGSNSMVNF KNANGGDSME 60 KPFFQPIDKE ENGDDDYDGS LLQQPGKKRR LTVDQVQFLE KNFELENKLE PDRKGQLAKE 120 LGLEPRQVAI WFQNRRARFK TKQLEKDYDS LRASFEKLKG DHDNLLKQNG NLKNEIDSLK 180 DMLLSREKGK GNLESNDGIN SPNIDPPQSG IPNNASDDYV PIMVFKQEDA SSAKSDVFDS 240 DSPRCTENHS FLLEPTTTAD SSHGFEPADN SDFSQDDEDD NSLSKSLLPL PLPLPLPPPC 300 LLKLEDICYD DPPAISSNFG LIPVEDQHPF GFWPY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARFKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27045.1 | 3e-33 | HD-ZIP family protein |