PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00115

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 432aa MW: 49098.7 Da PI: 9.53

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00115	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.4e-16	80	139	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Ro04_G00115 80 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 139 789****************988855556447***********************98 PP
2	AP2	54.6	2.7e-17	182	233	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g Ro04_G00115 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 233 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MDHQLASSVK SELMKSPRKR PICMIDVDAL VNKCVKRRRR DSSTAVSPTG HSVDQQQQKQ 60 TNHQSSTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY 120 DEEESAARAY DLAALKYWGT STFTNFPVSD YEIEIDLMNT LTKEEYLASL RRRSSGFSRG 180 VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF 240 DLSTYIRWLR PGSNSLAANS QEQPKPNIPD FNRNNPSKEE KQMSIFNPNN SFTEDIDTSR 300 TRDIFQRQST MPPISPTCTT KSSNSPTALG LLLKSSLFKE LVEKNLNDEN EESDDEKNDT 360 IKNLLPQTNG TENLKRILYE GIHNIPFSCS SNTDVLPALE SREKSMLPLC NSRGQSLWNN 420 GAMNMFSSAD FN

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MDHQLASSVK SELMKSPRKR PICMIDVDAL VNKCVKRRRR DSSTAVSPTG HSVDQQQQKQ  60
TNHQSSTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY  120
DEEESAARAY DLAALKYWGT STFTNFPVSD YEIEIDLMNT LTKEEYLASL RRRSSGFSRG  180
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF  240
DLSTYIRWLR PGSNSLAANS QEQPKPNIPD FNRNNPSKEE KQMSIFNPNN SFTEDIDTSR  300
TRDIFQRQST MPPISPTCTT KSSNSPTALG LLLKSSLFKE LVEKNLNDEN EESDDEKNDT  360
IKNLLPQTNG TENLKRILYE GIHNIPFSCS SNTDVLPALE SREKSMLPLC NSRGQSLWNN  420
GAMNMFSSAD FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	40	RKRPICMIDVDALVNKCVKRRRR
2	106	114	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-78	AP2 family protein