PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00111

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 600aa MW: 65400.1 Da PI: 6.3923

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	249	307	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ Ro04_G00111 249 NDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGNHNHP 307 8************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MEDNRMKSDG DDSEGTSKEI NKGGPGLWHV EEVAEGKYSL KQQPSPREKD RDLIKHTQEA 60 DVELESAKAE MGEVREENER LKVLLSRIVK DYQDLQMHFL DVIQKEETNK KSMDTSTTAE 120 ADELVSLSLG RTSSTTSTHD HQLRKDHHEI MKNNCKDDDN EVMDEAGLAL ELGCRSFEPA 180 AAVDHEPIKV NSSSENNSSA GDPKEDEVTE IWPPSKMLKT RDDDVSQQQT HLKKARVSVR 240 ARCDAPTLND GCQWRKYGQK IAKGNPCPRA YYRCTVSPSC PVRKQVQRCA EDMSILITTY 300 EGNHNHPLPM SATAMASTTS AAASMLQSHS STSQQGLVNS TTAPISSSTS NLHGHGLNFT 360 SLSQNSSRLL PESQFYFPNS SISTNNSHPT ITLDLTAPSP SHFGLRFPSG LPRYSSSTCL 420 NFSSSSSSSL DHSALLQAPN WINNHAAAGY FNYGTVLSHQ NRMNQAVGGS SLNIGKQPFQ 480 EPNFYQSYIQ NSQKAAPAPP QNHLYTETIA TATKAITSNP KFQSALAAAL TSFVGTNGGT 540 SGVVRENNHI VNGSSSTESS GLKLKWGESL TPNDPIYPST QNGIGLASSG YLNQSSSPLN

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MEDNRMKSDG DDSEGTSKEI NKGGPGLWHV EEVAEGKYSL KQQPSPREKD RDLIKHTQEA  60
DVELESAKAE MGEVREENER LKVLLSRIVK DYQDLQMHFL DVIQKEETNK KSMDTSTTAE  120
ADELVSLSLG RTSSTTSTHD HQLRKDHHEI MKNNCKDDDN EVMDEAGLAL ELGCRSFEPA  180
AAVDHEPIKV NSSSENNSSA GDPKEDEVTE IWPPSKMLKT RDDDVSQQQT HLKKARVSVR  240
ARCDAPTLND GCQWRKYGQK IAKGNPCPRA YYRCTVSPSC PVRKQVQRCA EDMSILITTY  300
EGNHNHPLPM SATAMASTTS AAASMLQSHS STSQQGLVNS TTAPISSSTS NLHGHGLNFT  360
SLSQNSSRLL PESQFYFPNS SISTNNSHPT ITLDLTAPSP SHFGLRFPSG LPRYSSSTCL  420
NFSSSSSSSL DHSALLQAPN WINNHAAAGY FNYGTVLSHQ NRMNQAVGGS SLNIGKQPFQ  480
EPNFYQSYIQ NSQKAAPAPP QNHLYTETIA TATKAITSNP KFQSALAAAL TSFVGTNGGT  540
SGVVRENNHI VNGSSSTESS GLKLKWGESL TPNDPIYPST QNGIGLASSG YLNQSSSPLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	PREKDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-68	WRKY family protein