PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00095
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 301aa    MW: 34096.1 Da    PI: 6.4389
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1785138356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ro04_G00095  85 KKRRLNMEQVKTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 138
                  456899***********************************************9 PP
2HD-ZIP_I/II128.43e-4184174191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqvk+LE++Fe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++ne+L+ ++++L++e+
  Ro04_G00095  84 EKKRRLNMEQVKTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKADNEALQVHNQKLQAEI 174
                  69**************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MTGNGMAFFQ ANFMLQSPHH EDHDHHQPPT SLNPLLPSCT PQDYHGVASF LGKRSMSFSG  60
IELGTEEGHG EDDLSDDGSQ AGGEKKRRLN MEQVKTLEKN FELGNKLEPE RKLQLARALG  120
LQPRQIAIWF QNRRARWKTK QLEKDYDLLK RQFDAIKADN EALQVHNQKL QAEILALKNR  180
EPAESINLNI KETEGSCSNR SENNSAEIKL DISRTSAIDS PLSSNPNPII TSRSLFPTST  240
ATIRPSAVQQ LFHQNPTSRP ELLQCSQKID HIVKEESLSN MFCGIDDQSG FWPWLEQHQF  300
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-118HD-ZIP family protein