PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00075

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 459aa MW: 51446.6 Da PI: 7.1128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00075	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.6e-52	22	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ Ro04_G00075 22 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSegn 118 579*************************.89***********8888899***********************************9665 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Ro04_G00075 119 SNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 151 5556*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MDQDRSSSDM SAADQDKIDE VMLPGFRFHP TDEELVGFYL KRKIQQRPLS IELIKQLDIY 60 KFDPWDLPKL AASGEKEWYF YCPRDRKYRN STRPNRVTGA GFWKATGTDR PIYSSEGNSN 120 KCIGLKKSLV FYKGRAAKGV KTDWMMHEFR LPSLTDSSVH PPKRSFMDKI AIPANVYKSQ 180 DSWAICRIFK KTNSSAHQRA ISHHSWVSHT FPETNIFQDH MLGSYKLGAQ TTPTEFSGNN 240 IDIPQTTTTS TISPIDYYAN NSYKTLNPSM ACNFKPYHQY FPISNAGDYF NHSFTFSPLE 300 SPAAKCSLDV SSLLLNMSSS VLGDFGAKLA SAESSTTFDF SSITGSQEQQ CNNGISSMTA 360 LPHHEVMQGN QLGVVGSHDH SIDALMKNIT NHVNSNATET DDHEHWETSL RSSSIGFPFM 420 GSLPLIPLNI AAGETWNKSS LTWDSSPCPS EMSTTRCYS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MDQDRSSSDM SAADQDKIDE VMLPGFRFHP TDEELVGFYL KRKIQQRPLS IELIKQLDIY  60
KFDPWDLPKL AASGEKEWYF YCPRDRKYRN STRPNRVTGA GFWKATGTDR PIYSSEGNSN  120
KCIGLKKSLV FYKGRAAKGV KTDWMMHEFR LPSLTDSSVH PPKRSFMDKI AIPANVYKSQ  180
DSWAICRIFK KTNSSAHQRA ISHHSWVSHT FPETNIFQDH MLGSYKLGAQ TTPTEFSGNN  240
IDIPQTTTTS TISPIDYYAN NSYKTLNPSM ACNFKPYHQY FPISNAGDYF NHSFTFSPLE  300
SPAAKCSLDV SSLLLNMSSS VLGDFGAKLA SAESSTTFDF SSITGSQEQQ CNNGISSMTA  360
LPHHEVMQGN QLGVVGSHDH SIDALMKNIT NHVNSNATET DDHEHWETSL RSSSIGFPFM  420
GSLPLIPLNI AAGETWNKSS LTWDSSPCPS EMSTTRCYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-96	NAC family protein