PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00011
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 592aa    MW: 65356.8 Da    PI: 8.228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47e-34311367259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+geHnh+
  Ro04_G00011 311 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGEHNHQ 367
                  8****************************************.***************8 PP
2WRKY107.28.3e-34478536159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Ro04_G00011 478 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHNHD 536
                  59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    
MEAVSHQHQH TTSISIQRRS SESEKKNRGQ KQKPSQKNRK ELFRLSLSGV DFLLNFRSTE  60
PKTKQCVWFG FETASLVCCW FGFDQMAESE QQEEPPPPST SSAPSAPSRP TITLPPRTSF  120
ETLFNTSGSG TTGQGLGFSP GPMTLVSSFF SDGEDCKSFS QLLAGAMLSP AGFPQLEDRN  180
SGDDSSEFRF KQNEPAGQSI GPPSPMFPAG FLDSPGLFSP GQGAFGMTHQ QALAQVTAQA  240
SHSQSYTFHI PNEHTTTSMT QLPVFTSSTT APKEITSGIP DSGVTRKESS DISHADQRSQ  300
PSSLTVDKPN DDGYNWRKYG QKQVKGSEFP RSYYKCTHPS CPVKKKVERS VDGQITEIIY  360
KGEHNHQRPQ SKRPKDSRNQ NGNVQVNHDL ASQVHGGSSK EGTYSTSKQG QESSQAISGT  420
SDSEEVGDAE TKVEERDEDE PDAKRRNTEV RHSEPASSHR TVTEPRIIVQ TTSEVDLLDD  480
GYRWRKYGQK VVKGNPYPRS YYKCTFQGCN VRKHVERAAT DPKAVITTYE GKHNHDVPAS  540
KTGSHYTANN NASNIRSGNP GTGKHASVSR MDPRNNDQQP IARLRLKEEQ IT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-167WRKY family protein