PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro03_G33114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 216aa MW: 24637.6 Da PI: 8.0274 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137 | 5.5e-43 | 135 | 212 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gC+adls+ak y+rrhkvC++hskap+vlv gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk+++ Ro03_G33114 135 CCQAPGCNADLSDAKPYYRRHKVCDFHSKAPAVLVGGLQQRFCQQCSRFHDLSEFDENKRSCRRRLAGHNERRRKSSN 212 6**************************************************************************976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence |
MKTREHMELV VLTHNSLFLL LFHLVVSQGF SFNSVGSLTS ILHTSFSYLL LLPPLFFCKM 60 ETDKAQGKRR LNYKIEEEEE EGEEEDNDEE DHSSRPSVLV HGEDDRRKRV TMMNSTSTSS 120 KKGSGAGGST TTRPCCQAPG CNADLSDAKP YYRRHKVCDF HSKAPAVLVG GLQQRFCQQC 180 SRFHDLSEFD ENKRSCRRRL AGHNERRRKS SNDYPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-39 | SBP family protein |