PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G33035

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 490aa MW: 53307.3 Da PI: 7.5557

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G33035	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.7	3.5e-37	67	233	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssss 81 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ s Ro03_G33035 67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnssfpetpkqlsdekraS--------------- 149 689***********************************************************4443333333333222220............... PP TCP 82 asnsssg............................kaaksaakskksqksaasalnlak....esrakarararertrekmriknkln 137 s++ +++++a+s+ s++s+ s l+l++ r kar+rarer ++++ ++n++n Ro03_G33035 150 ----SEHrfdsveldadgdpnyrhqhihnqsqnqhLSMSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKEKEKENNNN 233 ....11122333344555555444444455555554555555666666666666666664333555*******7777777666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEVEEIQAQP CKFPRIGNGG RGSGVAHNPD EEEDGRELKR AGGPEAGGGN RLNGWHHSRI 60 IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA 120 ADAIAELPSL NNSSFPETPK QLSDEKRASS EHRFDSVELD ADGDPNYRHQ HIHNQSQNQH 180 LSMSKSACSS TSETSKGSGL SLSRSEIRVN RVKARERARE RAAKEKEKEN NNNDESSRIA 240 HAISQNASFT ELLTGGIGSN NSPTGHQQNP AGGNSGEPIL FHKAAPMDYF GSGLLGLSSS 300 ATRNHHHSGF SGQIHLGNSL PQTMFSISSD HNNHPPEMQH FSFVPDYIPV SAAANGGDYN 360 LNFSMSSSGS LAGFNRGTLQ SNSSPSPSLL PHLQRFSPID GSSNGPFFIG GAASAAAAAA 420 PTMENHSHHH HHHQHHHQFP AGSMVTEAGI QTTREKQRTD LCSPPSFWTL AHRYQRSLES 480 EAKEVVASCE

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEVEEIQAQP CKFPRIGNGG RGSGVAHNPD EEEDGRELKR AGGPEAGGGN RLNGWHHSRI  60
IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA  120
ADAIAELPSL NNSSFPETPK QLSDEKRASS EHRFDSVELD ADGDPNYRHQ HIHNQSQNQH  180
LSMSKSACSS TSETSKGSGL SLSRSEIRVN RVKARERARE RAAKEKEKEN NNNDESSRIA  240
HAISQNASFT ELLTGGIGSN NSPTGHQQNP AGGNSGEPIL FHKAAPMDYF GSGLLGLSSS  300
ATRNHHHSGF SGQIHLGNSL PQTMFSISSD HNNHPPEMQH FSFVPDYIPV SAAANGGDYN  360
LNFSMSSSGS LAGFNRGTLQ SNSSPSPSLL PHLQRFSPID GSSNGPFFIG GAASAAAAAA  420
PTMENHSHHH HHHQHHHQFP AGSMVTEAGI QTTREKQRTD LCSPPSFWTL AHRYQRSLES  480
EAKEVVASCE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	4e-45	TCP family protein