PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G33008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LSD | ||||||||
Protein Properties | Length: 161aa MW: 17383.3 Da PI: 8.0784 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.3 | 1e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Ro03_G33008 7 CSGCRSILLYPRGASNVCCALCNII 31 **********************976 PP | |||||||
2 | zf-LSD1 | 34.5 | 3.4e-11 | 58 | 77 | 6 | 25 |
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 tlL+ +rGA+sVRC++C+tV Ro03_G33008 58 TLLMHTRGATSVRCSCCHTV 77 8******************9 PP | |||||||
3 | zf-LSD1 | 51.5 | 1.7e-16 | 90 | 114 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V Ro03_G33008 90 CGNCRTTLMYPYGAPSVKCAVCQFV 114 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MQSQLVCSGC RSILLYPRGA SNVCCALCNI ITPAPPPVRP LAAVLQNAEH PESNLVETLL 60 MHTRGATSVR CSCCHTVNLA PANQVSHINC GNCRTTLMYP YGAPSVKCAV CQFVTNVGSM 120 PHSQSQTVVV ENPMSVDESG KLMFIIYNIC ARNYVNVRCP I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 8e-48 | LSD family protein |