PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G32898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 29289.9 Da PI: 6.6564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.2 | 2.5e-26 | 9 | 138 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+P e+l+v+yL++k+eg+ ++ ++++d+y ePw++ + + ++e+k++yf ++++kk+++g+r +r++ sg+Wk +k+vl Ro03_G32898 9 VGYRFRPDIEQLLVHYLRPKLEGQAFPK-GPVHNCDLYGNqEPWQIWEafkeslEKDQERKDLYFITQHKKKTPKGSRISRTVGSGTWKGDDASKKVL 105 7************************999.88******96549****64345543333355588*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++g +k + + ++ + ++ +W+mhey+l Ro03_G32898 106 AASRRVIGKRKRFHYE--NKGSVQNGRWIMHEYEL 138 *9*********99987..55556789*******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MAVHDDPVVG YRFRPDIEQL LVHYLRPKLE GQAFPKGPVH NCDLYGNQEP WQIWEAFKES 60 LEKDQERKDL YFITQHKKKT PKGSRISRTV GSGTWKGDDA SKKVLAASRR VIGKRKRFHY 120 ENKGSVQNGR WIMHEYELDA SLLRNKHQAK KKNDKSEKDQ KLEEQENQEE DMMSCDYGDQ 180 QDGDHHDEPE FVEEETVMTR DNFRKHVLDF EVYLKKLIAE QAMKKNDHKD SQKMILEELE 240 RHMMSDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 155 | KRKRFHYENKGSVQNGRWIMHEYELDASLLRNKHQAKKKNDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 2e-18 | NAC family protein |