PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G32897

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 244aa MW: 28836.3 Da PI: 6.6854

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G32897	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.1	2.8e-26	9	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+P e+l+v+yL++k+eg+ ++ ++++d+y + ePw++ + + ++e+k++yf ++++kk+++g+r +r++ sg+Wk +k+vl Ro03_G32897 9 VGYRFRPDIEQLLVHYLRPKLEGQAFPN-GPVHNCDLYGHqEPWQIWEafkeslEKDQERKDLYFITQHKKKTPKGSRISRKVGSGTWKGEDASKKVL 105 7**********************999.88***887964345543333355588******************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++g++k + + ++ + ++ W+m+ey+l Ro03_G32897 106 AASRRVIGMRKRFHYE--NEGSVQNGGWLMQEYEL 138 ********9997..55556789*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MAVHDDPVVG YRFRPDIEQL LVHYLRPKLE GQAFPNGPVH NCDLYGHQEP WQIWEAFKES 60 LEKDQERKDL YFITQHKKKT PKGSRISRKV GSGTWKGEDA SKKVLAASRR VIGMRKRFHY 120 ENEGSVQNGG WLMQEYELDA SLLRNKHQAK KKNDKSEKDQ KQEEKENQEE DMMSCDYGDQ 180 QDGDLHEPQF IKQETTQDNY RKHLLDFEVY LKKQIAEQAL KKNDHKDSQK MILEELEKQL 240 MSDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	3e-17	NAC family protein