PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G32299
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 459aa    MW: 52970.6 Da    PI: 7.8441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G32299genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-1275129256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +k++++  + +++Lee+  k +yp+ +++ee+A++l L+ +q+++W qN+R++++
  Ro03_G32299  75 SKKRKYDGYTIQQLEEFITKYPYPNDNQKEEMARQLLLQPKQITYWIQNHRTRRR 129
                  677899999*******999**********************************98 PP
2START1394.8e-442244454206
                  HHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   4 eeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                   +a++el+ +a+a++p+W ++         +++n+ e+l++f+++ +     +  e++r+s++v m++ + v++l+d+k qW++ +     +a tlev
  Ro03_G32299 224 FAAMEELIMMAQAGAPLWISEKhgghpnqhDILNKVEYLKIFPRNPNhtptnFWPETSRDSAMVLMDPINIVKILMDVK-QWSNVFGniisRARTLEV 320
                  689***************************************9987799998889************************.******9999******** PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  +  g      +al  m ae+ ++splvp R+  fvRy+rq  ++ wv+vd ++  e +   + s++++ ++pSg+li+ +++g skvtwve+++++  
  Ro03_G32299 321 LAVGdkenfnEALLEMIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLKEIF---QDSLAKCYRRPSGCLIQALPDGNSKVTWVENAEMDNE 414
                  **999*********************************************.4444444...5589********************************* PP

                  XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                   +++l+ +l++ g+a+gak+wv+tl+rqce+
  Ro03_G32299 415 DVQNLYLPLIRFGAAFGAKRWVSTLERQCER 445
                  *****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MSRQVRSFDE LMQPSNLDYE GWLGELPRGA IKNCDMPKEK QLQISSWIGP SNPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FITKYPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTRRRA EFFRSENDAL KKEVTKLHVK LKGYEQAFAN TTCLVCGGPR ITAKGLDYRP  180
QVPNADPSIE KGKSLLDFPE AFQQARKDFL HTKDGKDLVA KLVFAAMEEL IMMAQAGAPL  240
WISEKHGGHP NQHDILNKVE YLKIFPRNPN HTPTNFWPET SRDSAMVLMD PINIVKILMD  300
VKQWSNVFGN IISRARTLEV LAVGDKENFN EALLEMIAEF HLPSPLVPVR EHHFVRYCRQ  360
YYEDLWVVVD ADLKEIFQDS LAKCYRRPSG CLIQALPDGN SKVTWVENAE MDNEDVQNLY  420
LPLIRFGAAF GAKRWVSTLE RQCERLILAL RRPISGLHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-106HD-ZIP family protein