PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G32190
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 557aa    MW: 63402.5 Da    PI: 8.565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G32190genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-0976128355
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k++++  + +++Lee+  kn+y++ +++ee+A++l L+ +q+++W qN  +++
  Ro03_G32190  76 KKRKYDGYTIQQLEEFITKNPYLNNNQKEEMARQLLLQPKQITYWIQNYITRR 128
                  456888899******999******************************76665 PP
2START76.19.1e-2519530988206
                  T....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
        START  88 g....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                  +    +al+ m ae+ ++splvp R+  fvRy+rq  ++ wv+vd ++  e +   + s++++ ++pSg+li+++++g+skvtwve+++++    ++l
  Ro03_G32190 195 NanfnEALHKMIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLREIF---QDSIAKSYRRPSGCLIQTLPDGYSKVTWVENAEVDNEDAQNL 288
                  4556699**************************************.3333333...4578888888******************************** PP

                  HHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 181 lrslvksglaegaktwvatlqrqcek 206
                  + +l++s     ak+wv+tl+rqce+
  Ro03_G32190 289 YLPLIRS-----AKRWVSTLERQCER 309
                  ***9987.....8***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MSRQVRSFVE LMQPSNLDYE GWLGELPRDA VKNCDIPKEK QLQISSWIGP SDPRSPEEDL  60
DPSSGSHMGP SQLKFKKRKY DGYTIQQLEE FITKNPYLNN NQKEEMARQL LLQPKQITYW  120
IQNYITRRRA EFFRSENDAV KKEVAKLHVK LKWYEQAFTN TTCLVCGGPR ITTKGLDYRP  180
QVPNADPNIE KVGDNANFNE ALHKMIAEFH LPSPLVPVRE HHFVRYCRQY YEDLWVVVDA  240
DLREIFQDSI AKSYRRPSGC LIQTLPDGYS KVTWVENAEV DNEDAQNLYL PLIRSAKRWV  300
STLERQCERS VSSMATSHDP ISLGVIYDDK GKRGLYNLAR RMMLKFHSDI SVSAANQWST  360
SLECPGSDEI RSMVKVIVED PGVPKGTIFS IVSSLWRLTS PRDGNVVEEI MRIITSPNPG  420
NYISILCIDG ANSRTAKRLI LQESCANLIE LYLVYTKINF FEMKAVLNGA DPDSVVLLPS  480
DFAIIPNVAA TKRAGGSHGI NTDETLLTIA IQKVVHLGRN LKFFNKPLTE AKKRIRTIIT  540
GITRAALKDH QQFAGLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.14e-86HD-ZIP family protein