PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G31799
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 625aa    MW: 70891.8 Da    PI: 7.1872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G31799genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.68.8e-1364118256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +k++++ ++ +++Lee+  kn+y++ +++ee+A++l L+ +q+k+W qN+R++++
  Ro03_G31799  64 SKKRKYDNYTIQQLEEFITKNPYLNDNQKEEMARQLLLQPKQIKYWIQNHRTRRR 118
                  678899**********999**********************************98 PP
2START144.78.7e-461794004206
                  HHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   4 eeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  e+a++elv +a+a++p+W  ++        +++n+ e+l++f+++ +     +  e++r+s++v m++++ v++l+d+k qW++ +     +a tlev
  Ro03_G31799 179 EKAMEELVMMAQAGAPLWIFERhgghpnqhDILNKVEYLKIFPRNPNhtptnFWPETSRDSTMVLMDPVNIVKILMDVK-QWSNVFGniisRARTLEV 275
                  689***************************************9987799998889************************.******9999******** PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                  ++ g      +al+ m ae+ ++splvp R+  fvRy+rq  ++ wv+vd  +d ++     + s++++ ++pSg+li+ +++  skvtwve+++++ 
  Ro03_G31799 276 LTVGdkenfnEALHEMIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD--DDLKE---IfQDSLAKCYRRPSGCLIQALPDENSKVTWVENAEVDN 368
                  **************************************************..33333...336799******************************** PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                    +++l+ +l++sg+a+gak+wv+tl+rqce+
  Ro03_G31799 369 EDVQNLYLPLIRSGAAFGAKRWVSTLERQCER 400
                  ******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    
MSRQVRFFDE LIQPSNLDYE GWLGELPRGA LQISSWIGSS NPRSPEEDLD PSSGSDISPS  60
RFKSKKRKYD NYTIQQLEEF ITKNPYLNDN QKEEMARQLL LQPKQIKYWI QNHRTRRRAE  120
FFRSENDALK KEVTKLHVKL KGYEQAFANT TCLVCGGPRI TTKGLDYRPQ VLDAGPNIEK  180
AMEELVMMAQ AGAPLWIFER HGGHPNQHDI LNKVEYLKIF PRNPNHTPTN FWPETSRDST  240
MVLMDPVNIV KILMDVKQWS NVFGNIISRA RTLEVLTVGD KENFNEALHE MIAEFHLPSP  300
LVPVREHHFV RYCRQYYEDL WVVVDDDLKE IFQDSLAKCY RRPSGCLIQA LPDENSKVTW  360
VENAEVDNED VQNLYLPLIR SGAAFGAKRW VSTLERQCER ASAANQWSTS LECPGSDEIQ  420
SMVKVNMEDL GVPKGTIFST VSSLWRLTSP RDVFEFLQNL QTQHPWDILA KGEVVEEVMR  480
IITSPNPGNY ISMLRIDGAN SGTSKRLILQ ESCVNSIESY LVYTKINFFE MKAVLNGANP  540
DSVALLPSGF AIIPNVAATK GVGGSHGTNT DGTVLTIAIQ KVAHLGQNLK NFNKPLTEAK  600
KRIRAIIAGI TRAALKDHQQ LAGLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1599605AKKRIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-122HD-ZIP family protein