PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G27758

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 506aa MW: 56886.8 Da PI: 8.9981

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G27758	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.4	3.2e-05	1	24	33	56
HHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRakek 56 +A++l L+ +q+++W qN++++++ Ro03_G27758 1 MARQLLLQPKQITYWIQNHKTRRR 24 599*******************98 PP
2	START	49.5	1.2e-16	201	268	139	206
-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + s++++ ++pSg+li+ +++g+skvtwve+++++ ++l+ l +sg+a+gak wv+tl+rqce+ Ro03_G27758 201 QDSLAKSYRRPSGCLIQALPDGYSKVTWVENAEVDNEDAQNLYLLLNRSGAAFGAKCWVSTLERQCER 268 5678888899********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MARQLLLQPK QITYWIQNHK TRRRVEFFRN ENEALKKEVA KLHVKLKGYE QAFANTTCLV 60 CGGPRITTKG LDNTDPNIKK DKSPLGFPEA FQQARKDFLH TKDGKDLVAK LVFAAMEELV 120 MMAQVGAPLW ISEKHGGHPN QHDILNKVEY LKIFPRNPNH TPTNFWPKTS RDSAMVLMDP 180 INIVKILMDA VVDVDLREIF QDSLAKSYRR PSGCLIQALP DGYSKVTWVE NAEVDNEDAQ 240 NLYLLLNRSG AAFGAKCWVS TLERQCERLV SSMATSHDPI SLGVIYDEKG KKECPGSDEI 300 QSMVKVNMED PGVPKGTIFS TVSSLWCLTS PRDVFEFLQN LQTQHPWDIL AKGDVVEEIM 360 RIITSPNPGN YISMMRIDGA NSRTSKRLIL QESCANSIEL YLVYTKINFF EMKAVLNWAN 420 PDSVALLPSG FAIIPNVAAT KGVGGSHRTN TYETLLTIAI QKVVHLGRIL KNFNKPLTEA 480 KKCIRAIIAG IMRAALKDHQ QFAGLY

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MARQLLLQPK QITYWIQNHK TRRRVEFFRN ENEALKKEVA KLHVKLKGYE QAFANTTCLV  60
CGGPRITTKG LDNTDPNIKK DKSPLGFPEA FQQARKDFLH TKDGKDLVAK LVFAAMEELV  120
MMAQVGAPLW ISEKHGGHPN QHDILNKVEY LKIFPRNPNH TPTNFWPKTS RDSAMVLMDP  180
INIVKILMDA VVDVDLREIF QDSLAKSYRR PSGCLIQALP DGYSKVTWVE NAEVDNEDAQ  240
NLYLLLNRSG AAFGAKCWVS TLERQCERLV SSMATSHDPI SLGVIYDEKG KKECPGSDEI  300
QSMVKVNMED PGVPKGTIFS TVSSLWCLTS PRDVFEFLQN LQTQHPWDIL AKGDVVEEIM  360
RIITSPNPGN YISMMRIDGA NSRTSKRLIL QESCANSIEL YLVYTKINFF EMKAVLNWAN  420
PDSVALLPSG FAIIPNVAAT KGVGGSHRTN TYETLLTIAI QKVVHLGRIL KNFNKPLTEA  480
KKCIRAIIAG IMRAALKDHQ QFAGLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	4e-72	HD-ZIP family protein