PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G27408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24644.4 Da PI: 8.8018 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.9 | 1.5e-19 | 10 | 46 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kR +++lKKA+ELS+LCdaevavi fs +gkl+eyss Ro03_G27408 10 KRHATLLKKAKELSILCDAEVAVIAFSGDGKLHEYSS 46 9**********************************96 PP | |||||||
2 | K-box | 31.6 | 6.9e-12 | 84 | 166 | 9 | 91 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++++++s+++ ++ Lk + L+ +R+++G+ L++Ls +eL Leq+ + +l ++ +kK+ell+ +++++ k +++l+++ Ro03_G27408 84 AKQEDQKSCDKIVDALKGQEAALRLHKRRRMGKALDELSREELCALEQEQNWALLSVMKKKEELLVGMLQRSEKENENLKRNF 166 5667778888899********************************************************99999999988764 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MPEIETLGRK RHATLLKKAK ELSILCDAEV AVIAFSGDGK LHEYSSTSVE HTLSRYKKKK 60 VGLVLPSKVE SDQPEERRRE MAAAKQEDQK SCDKIVDALK GQEAALRLHK RRRMGKALDE 120 LSREELCALE QEQNWALLSV MKKKEELLVG MLQRSEKENE NLKRNFEETM REKPYFLQFP 180 GVLTVFGTSS KAISLSNGPI QDEEKNLMEK EDRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-29 | MIKC_MADS family protein |