PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G27058
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 193aa    MW: 21725.6 Da    PI: 4.9934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G27058genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08109133226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++r+G CkyG++ +F+H+
  Ro03_G27058 109 GERVCLYYMRNGSCKYGSNYRFNHP 133
                  7899***************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MADIEKLRRA REAMSKLLPL TPSMWQDWAK DEAAMGSGPE TLSTVEKLYE QGVFDYLVFY  60
KSQQCTFSTL DEYVDLFLTR IDGSRRRLSC PIEGENALDY SLLRETFQGE RVCLYYMRNG  120
SCKYGSNYRF NHPDPTAAGG SNPPFGFDNG GPASLQWWIT VTSWSAPKSL SVTPLYVPMM  180
MPPSQGVPSQ NTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-19C3H family protein