PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G26747
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 443aa    MW: 49814.1 Da    PI: 5.8288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G26747genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.41.6e-142254401374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA+ v++g+le+a+ +L+++s laspdgd+mqR+aayfteALa r+++ +++lykal++++ s  ++see+ ++k+f+e+ P+lk++++++
  Ro03_G26747  25 LIHLLLTCANYVAAGSLENANVALEQISLLASPDGDTMQRIAAYFTEALADRILKGWPGLYKALNSTKIS--SVSEEILVRKVFFEMLPFLKVAYVLT 120
                  689*************************************************************999998..6************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+e+e++vHiiD+++ +++QW+aLl+ L++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn+ ++++le+l++e+Lrv
  Ro03_G26747 121 NQAIIEAMEEEKMVHIIDLNAAEPAQWIALLHVLSARPEGPPHLRITGIHE----QKEVLDQMAHRLTEEAEKLDIPFQFNP-LVSKLENLDFEKLRV 213
                  ***************************************************....9**************************.5999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..................................................desvsles....erdevLklvkslsPkvvv 240
                  k+gEala+++vlq h+ll                                                   +          + d++L+++++l Pk++v
  Ro03_G26747 214 KTGEALAISSVLQFHSLLssdddfhkknpngahstrvlqtsqgtlgellekdmgkgyspspdstssspLS-----PigsvKMDSFLNAFWGLTPKLMV 306
                  *************************************************************997654422.....123456899************** PP

         GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                  ++eq+++hn++s++er++eal+ y+alfd+le++++r+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +rl+ aGF++vpl+++ + qa+
  Ro03_G26747 307 ITEQDSNHNGSSLMERLFEALYSYAALFDCLESTMSRTSLERLKVEKMLFGEEIKNIIACEGSERKERHEKLEKWIQRLDLAGFGNVPLGYYGMLQAR 404
                  ************************************************************************************************** PP

         GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ll+ ++ dgyr++ee+g++++ W+drp++svSaWr
  Ro03_G26747 405 RLLQGYGCDGYRIKEENGCVLMSWQDRPIFSVSAWR 440
                  ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MTSPSLGSPN PWQRELKSEE RGLYLIHLLL TCANYVAAGS LENANVALEQ ISLLASPDGD  60
TMQRIAAYFT EALADRILKG WPGLYKALNS TKISSVSEEI LVRKVFFEML PFLKVAYVLT  120
NQAIIEAMEE EKMVHIIDLN AAEPAQWIAL LHVLSARPEG PPHLRITGIH EQKEVLDQMA  180
HRLTEEAEKL DIPFQFNPLV SKLENLDFEK LRVKTGEALA ISSVLQFHSL LSSDDDFHKK  240
NPNGAHSTRV LQTSQGTLGE LLEKDMGKGY SPSPDSTSSS PLSPIGSVKM DSFLNAFWGL  300
TPKLMVITEQ DSNHNGSSLM ERLFEALYSY AALFDCLEST MSRTSLERLK VEKMLFGEEI  360
KNIIACEGSE RKERHEKLEK WIQRLDLAGF GNVPLGYYGM LQARRLLQGY GCDGYRIKEE  420
NGCVLMSWQD RPIFSVSAWR CRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein