PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G26663

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 350aa MW: 39074.5 Da PI: 7.2762

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G26663	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.6	6.2e-50	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 + pGfrF+Ptdeel+++yLk+k+++ + ++ evi+evdi+++ePwdLp k+v ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s ++ Ro03_G26663 17 MFPGFRFSPTDEELISYYLKNKCDNPDKSV-EVISEVDICNFEPWDLPaKSVIQSENEWFFFSPRGRKYPNGSQSRRATEFGYWKATGKERNVKS-SS 112 579********************99888.99***********667777899**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+k+tLvf+ grapkge+t+W+mhey + Ro03_G26663 113 NVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 143 9**************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MAGISKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKCD NPDKSVEVIS EVDICNFEPW 60 DLPAKSVIQS ENEWFFFSPR GRKYPNGSQS RRATEFGYWK ATGKERNVKS SSNVIGTKRT 120 LVFHIGRAPK GERTEWIMHE YCMLNDKSQD SMVVCRLRKN SDFHLNNTTN RGSSSQSPLS 180 TMHKSENAVS EVGIDQGEKA TECYSKKSTS SHDSHSVEQI DSASDSYQKP TTEVTQIESS 240 GHPMGSCDDD DFFAEILKDD IINLDESSVS VAADTRPVVA SNSEAIVSQA IPSQGTANRR 300 IRLRRPKLKF RAQPLIDCTK SEQSSKGLAN SHVSVSFYVG RFLASEKHHK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MAGISKEAQL SIAASSMFPG FRFSPTDEEL ISYYLKNKCD NPDKSVEVIS EVDICNFEPW  60
DLPAKSVIQS ENEWFFFSPR GRKYPNGSQS RRATEFGYWK ATGKERNVKS SSNVIGTKRT  120
LVFHIGRAPK GERTEWIMHE YCMLNDKSQD SMVVCRLRKN SDFHLNNTTN RGSSSQSPLS  180
TMHKSENAVS EVGIDQGEKA TECYSKKSTS SHDSHSVEQI DSASDSYQKP TTEVTQIESS  240
GHPMGSCDDD DFFAEILKDD IINLDESSVS VAADTRPVVA SNSEAIVSQA IPSQGTANRR  300
IRLRRPKLKF RAQPLIDCTK SEQSSKGLAN SHVSVSFYVG RFLASEKHHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	7e-93	NAC family protein