PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G26509

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 541aa MW: 61324.4 Da PI: 8.8571

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G26509	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.1	1.5e-43	372	471	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Ro03_G26509 372 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSNLQMQLAVAQ 469 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro03_G26509 470 AE 471 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MSELFQSHVL NRRFDDETLR VLESILVSKD VKSSMEVRSS LRQFMRSESL FVLREISEKN 60 VEEKLLVLEF LVRTFALVGD VESCLALRYE ALLLRDLKST THQWLKVPHL EWQNFAHQSL 120 DSGFYAIAAK ACENALLSLK GKSAEHLTPD EVDCERISTE DPKTNEVFES EQVIEKIKRL 180 KECAMASASS NSVQAQTADY MKKRLKEKSM ECSPVLKKTT CVASTLFRNG IKKRNLRKLN 240 ESRSLLGMSR NGTLKFHSQK KTIVVFGCLH QVPVFPSRIG FLGKSHWYDV MPRDTDDIQL 300 AHFLGPKDKK KDGNRRVKPE RENHTTAWPC QPIAVSYSSR AKAVVNQKDL FCNAAEREIW 360 VASRVKMGGT SPCASCKLLR RRCAKDCIFA PYFPSDDPHK FAIVHKVFGA SNVSKMLQEL 420 PIHQRGDAVS SLVYEANARV RDPVYGCVGA ISFLQNQVSN LQMQLAVAQA EILCIQMQQE 480 PVAATLPASQ MLDHHQYQDH DQKSLLLSNS HDFNNIPQYL SSFGSSSNVI QDPLKRESLW 540 T

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MSELFQSHVL NRRFDDETLR VLESILVSKD VKSSMEVRSS LRQFMRSESL FVLREISEKN  60
VEEKLLVLEF LVRTFALVGD VESCLALRYE ALLLRDLKST THQWLKVPHL EWQNFAHQSL  120
DSGFYAIAAK ACENALLSLK GKSAEHLTPD EVDCERISTE DPKTNEVFES EQVIEKIKRL  180
KECAMASASS NSVQAQTADY MKKRLKEKSM ECSPVLKKTT CVASTLFRNG IKKRNLRKLN  240
ESRSLLGMSR NGTLKFHSQK KTIVVFGCLH QVPVFPSRIG FLGKSHWYDV MPRDTDDIQL  300
AHFLGPKDKK KDGNRRVKPE RENHTTAWPC QPIAVSYSSR AKAVVNQKDL FCNAAEREIW  360
VASRVKMGGT SPCASCKLLR RRCAKDCIFA PYFPSDDPHK FAIVHKVFGA SNVSKMLQEL  420
PIHQRGDAVS SLVYEANARV RDPVYGCVGA ISFLQNQVSN LQMQLAVAQA EILCIQMQQE  480
PVAATLPASQ MLDHHQYQDH DQKSLLLSNS HDFNNIPQYL SSFGSSSNVI QDPLKRESLW  540
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-78	LBD family protein