PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G24707

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

E2F/DP

Protein Properties

Length: 425aa MW: 46982.4 Da PI: 4.4503

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G24707	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.7	1.7e-27	104	169	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Ro03_G24707 104 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 169 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MSGYRAPNPP AQPPPPIMQP NIHRQLPFSS VKPPFAASVD YHGFAPDRRP PTDHEAEGIT 60 VKPPAGKANK ASRLSKFNRS GPQTPASNAG SPSGANLTPA GPCRYDSSLG LLTKKFINLI 120 KHAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK LKNRIQWKGL EATRTGDADE 180 NYDGLKAQVE NLSIEEGRLD EQIREMQERL SNLSEDESNK KWLFVTEEDI KGLPCFQNET 240 LIAIKAPHGT TLEVPDPDEA VDYPQRRYRM VLRSMMGPID VYLVSQFEEK FEEINGAEEP 300 RNIPSTSGLN ENPAPTMVTE DIGKDVEIQG QEDDSICADP TASQDFMSGI MKIVPSDVNS 360 DADYWLLSDD ASVSITDIWR TETGVEWNEF GVLNEDYTMG NVTPRAQTLP SSSTEVPTTA 420 NPTRT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MSGYRAPNPP AQPPPPIMQP NIHRQLPFSS VKPPFAASVD YHGFAPDRRP PTDHEAEGIT  60
VKPPAGKANK ASRLSKFNRS GPQTPASNAG SPSGANLTPA GPCRYDSSLG LLTKKFINLI  120
KHAEDGILDL NKAADTLEVQ KRRIYDITNV LEGIGLIEKK LKNRIQWKGL EATRTGDADE  180
NYDGLKAQVE NLSIEEGRLD EQIREMQERL SNLSEDESNK KWLFVTEEDI KGLPCFQNET  240
LIAIKAPHGT TLEVPDPDEA VDYPQRRYRM VLRSMMGPID VYLVSQFEEK FEEINGAEEP  300
RNIPSTSGLN ENPAPTMVTE DIGKDVEIQG QEDDSICADP TASQDFMSGI MKIVPSDVNS  360
DADYWLLSDD ASVSITDIWR TETGVEWNEF GVLNEDYTMG NVTPRAQTLP SSSTEVPTTA  420
NPTRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-142	E2F/DP family protein