PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G23220

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 759aa MW: 83632.7 Da PI: 8.5224

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G23220	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.6e-09	570	602	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gL+ +qV++WF N R + Ro03_G23220 570 HPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 602 89*****************************87 PP
2	BELL	106.1	2.3e-34	416	485	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 qe q+kkakLl ++eeV++rYkqy++q+++v+ssFe vagl sa+pY+s+Al+++SrhF+cL i++q+ Ro03_G23220 416 QEYQQKKAKLLYMQEEVCRRYKQYHQQMEMVVSSFESVAGLSSATPYISFALNTVSRHFKCLTGSIKDQL 485 899***************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence
MEMSGFRPNE STHVAQQSRR DKLRVQQTSN LSHHHLDQNL PNNSQNPQLV QVRNVRNANS 60 LLFDPTLFSP ELLNFSTNAN HAFASSAQDL GAESPQNYGN WRSLNPPQSL DNWITNYTSG 120 TTSNHHMFVR EVNNISPSTT SHLKPSTYHG YQHFSSTPIY HNTLQDVVTT ASTAGSHQDE 180 LEMASWTQGY VNQSTTLGFD NSNSWMDRPI GSNRHNWSGG QELRSAMSDY SNQQGLSLSL 240 SSNPPPSQDL QASISGKSGG YLCSMTKPSI IRKACGTTKS LQDLVGTGTT STSNAAYHRS 300 TGPLGPFTGY ATILKSSKFL KPAQQLLEDF CRVSDHSKAF KTCEVSERIS GDKASASASA 360 SISVSNDQAA NATQNSVVAN MGKNNSGASS SAFYGSNEIS SDGGAAASTS SESFQQEYQQ 420 KKAKLLYMQE EVCRRYKQYH QQMEMVVSSF ESVAGLSSAT PYISFALNTV SRHFKCLTGS 480 IKDQLKHIRK ALGEDFSSTK IASTTGCGSR SVKTMGKLNY MGLGLQKHKA AGGVDAGFSE 540 PQQHVWRPQR GLPDRSVAIL RAWLFDHFLH PYPTDTDKHM LATQTGLSRN QVSNWFINAR 600 VRVWKPMVEE IHLLETRGSM EACQDPRQDG NSPTEGTSRP NNEQLGMNRV MPDRQLECSG 660 IRSLRDAPNV EVRQNQEIKR SRIECQVPSS MDSALMGFIP YSQSGIEVGG LGAVSLTLGL 720 RHGVESAQQQ QQQPQQLQQH EEYQLRRQLG GHIIRDFVG

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence

MEMSGFRPNE STHVAQQSRR DKLRVQQTSN LSHHHLDQNL PNNSQNPQLV QVRNVRNANS  60
LLFDPTLFSP ELLNFSTNAN HAFASSAQDL GAESPQNYGN WRSLNPPQSL DNWITNYTSG  120
TTSNHHMFVR EVNNISPSTT SHLKPSTYHG YQHFSSTPIY HNTLQDVVTT ASTAGSHQDE  180
LEMASWTQGY VNQSTTLGFD NSNSWMDRPI GSNRHNWSGG QELRSAMSDY SNQQGLSLSL  240
SSNPPPSQDL QASISGKSGG YLCSMTKPSI IRKACGTTKS LQDLVGTGTT STSNAAYHRS  300
TGPLGPFTGY ATILKSSKFL KPAQQLLEDF CRVSDHSKAF KTCEVSERIS GDKASASASA  360
SISVSNDQAA NATQNSVVAN MGKNNSGASS SAFYGSNEIS SDGGAAASTS SESFQQEYQQ  420
KKAKLLYMQE EVCRRYKQYH QQMEMVVSSF ESVAGLSSAT PYISFALNTV SRHFKCLTGS  480
IKDQLKHIRK ALGEDFSSTK IASTTGCGSR SVKTMGKLNY MGLGLQKHKA AGGVDAGFSE  540
PQQHVWRPQR GLPDRSVAIL RAWLFDHFLH PYPTDTDKHM LATQTGLSRN QVSNWFINAR  600
VRVWKPMVEE IHLLETRGSM EACQDPRQDG NSPTEGTSRP NNEQLGMNRV MPDRQLECSG  660
IRSLRDAPNV EVRQNQEIKR SRIECQVPSS MDSALMGFIP YSQSGIEVGG LGAVSLTLGL  720
RHGVESAQQQ QQQPQQLQQH EEYQLRRQLG GHIIRDFVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	7e-84	TALE family protein