PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G21185

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 369aa MW: 41558.5 Da PI: 8.3426

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G21185	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.1	4.9e-55	23	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhP+deel+++yL kkv ++++++ ++i+evd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ + Ro03_G21185 23 LPPGFRFHPSDEELITYYLLKKVMDSNFTC-RAIAEVDLNKCEPWQLPDKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTC 119 79*************************9.89***********99999************************************97455 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l g+kktLvfy+grapkg+k++Wvmheyrle Ro03_G21185 120 SLLGMKKTLVFYRGRAPKGVKSNWVMHEYRLE 151 679*************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDLMNLGRHF DQHNVGHHHD TQLPPGFRFH PSDEELITYY LLKKVMDSNF TCRAIAEVDL 60 NKCEPWQLPD KAKMGEKEWY FFSLRDRKYP TGLRTNRATE AGYWKATGKD REIYSSKTCS 120 LLGMKKTLVF YRGRAPKGVK SNWVMHEYRL EGRFAYNYLP RNSQEEWVIS RVFQKAKKSN 180 GPESKKTRMI GSSGSLYPPE PSSPSSSSVS LPPLFDSSPY YPTVAFSNGN ASLTDRDSCS 240 HDNRTPREHV SCFSTNSDPA NNGTFNHLMT TLDLAQPSPP QTSLEVSGGF PRSLGGLSDF 300 PSLRSLQENL QLPFFFPPAM QTPQPYSGAG TGGSFDLGDW SSLGNWRGAE EPRTRTVVGP 360 AEADCMWTY

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDLMNLGRHF DQHNVGHHHD TQLPPGFRFH PSDEELITYY LLKKVMDSNF TCRAIAEVDL  60
NKCEPWQLPD KAKMGEKEWY FFSLRDRKYP TGLRTNRATE AGYWKATGKD REIYSSKTCS  120
LLGMKKTLVF YRGRAPKGVK SNWVMHEYRL EGRFAYNYLP RNSQEEWVIS RVFQKAKKSN  180
GPESKKTRMI GSSGSLYPPE PSSPSSSSVS LPPLFDSSPY YPTVAFSNGN ASLTDRDSCS  240
HDNRTPREHV SCFSTNSDPA NNGTFNHLMT TLDLAQPSPP QTSLEVSGGF PRSLGGLSDF  300
PSLRSLQENL QLPFFFPPAM QTPQPYSGAG TGGSFDLGDW SSLGNWRGAE EPRTRTVVGP  360
AEADCMWTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	3e-99	NAC family protein