PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G21022
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family AP2
Protein Properties Length: 553aa    MW: 60856.6 Da    PI: 6.459
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G21022genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11171227155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Ro03_G21022 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227
                  57*******************5444.2455536655.779999**************98 PP
2AP247.16e-15272321355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Ro03_G21022 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321
                  9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MGSMNSNNWL SFPLSPTNSS LPSQLHPSHS HPFSLGLVSD TLDNPFQNQE WNMIDTQGSS  60
DVPKVADFLG VGKSENQSDL VAYNDINANE SVTNYIFPNI NNSIVPVENT VVGTSSNYDF  120
QENSNSLQSL TLSMGSGKGS STCETSTDNT STTTVEAPPR RALDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE  240
KEVEEMKNCT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SNTLPIGGGA AKRLKEAQAL  360
ETSRKREEMM ALGSTFQYAA GSSSSASSAA RNLQAYSLMQ QQPQSAYDQT LLSLQNHDIS  420
PYTHHDPSSY QNYIQTQLQL QQQSSNSYNI HQQSQSPHQY YNTYLQSTHP ALLQGLMDMG  480
TASTTVMDNS AVGYLGHNGL GMASNSTATN GVGSAEELAL VKVDYDMPSG GYGNWSGGSV  540
QGSNPGVFTM WND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein