PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G20492

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 487aa MW: 54440.3 Da PI: 6.441

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G20492	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.8	1.1e-23	114	167	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++Wt+eL +rF++ v+ + G e+A+Pktile+m+v+gLt+e+v+SHLQkYR Ro03_G20492 114 KSKVVWTQELQARFLDSVHFI-GLERAVPKTILEVMNVEGLTRENVASHLQKYRQ 167 6799***************.******************************5 PP
2	Myb_DNA-binding	30.8	7e-10	117	166	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ +++d v+ G + +ktI + m+ +g+t++++ s++qky+ Ro03_G20492 117 VVWTQELQARFLDSVHFIGLEraVPKTILEVMNvEGLTRENVASHLQKYR 166 68***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MVLQGQSDPI KLRVLIIGYD PVFLAIWTYS NPFVAFSALR VRRNFYDLIM TDLYLADMDG 60 FEVQKRGFAQ IGDRKVVRGK QSSETISDED TNGDPEKKNS KRKRSTKEGN APKKSKVVWT 120 QELQARFLDS VHFIGLERAV PKTILEVMNV EGLTRENVAS HLQKYRQFLR RLTARIPMSR 180 STFGKSRTSI FQQQQICGQN LSMNLNSSNL GRPLSGANDH HSSTTSVTPF GYRSHPNQPN 240 FLSHFQTPPQ PAFMGFRFQA NNVQCNNGLQ TQASPLTNHL YGNYNNHGTS VGFQYKNNFS 300 NGSWNGTMGS LNDSNSLNTN NNYYDIPMSS AASAGLAGIN SNLNPNLMVA NDNWASSTSG 360 LNTNFVGLVL NDIDQNEHHQ DMNNGSPMGN LMFGYNDFSG CEDASSVGFC GITTVEAAAS 420 SSNVVDASRN QNQTDQDFDD LHAILFNDTN LESVNQEEGK QIVNYETSVR VNFNRELIEE 480 LKFDWFD

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MVLQGQSDPI KLRVLIIGYD PVFLAIWTYS NPFVAFSALR VRRNFYDLIM TDLYLADMDG  60
FEVQKRGFAQ IGDRKVVRGK QSSETISDED TNGDPEKKNS KRKRSTKEGN APKKSKVVWT  120
QELQARFLDS VHFIGLERAV PKTILEVMNV EGLTRENVAS HLQKYRQFLR RLTARIPMSR  180
STFGKSRTSI FQQQQICGQN LSMNLNSSNL GRPLSGANDH HSSTTSVTPF GYRSHPNQPN  240
FLSHFQTPPQ PAFMGFRFQA NNVQCNNGLQ TQASPLTNHL YGNYNNHGTS VGFQYKNNFS  300
NGSWNGTMGS LNDSNSLNTN NNYYDIPMSS AASAGLAGIN SNLNPNLMVA NDNWASSTSG  360
LNTNFVGLVL NDIDQNEHHQ DMNNGSPMGN LMFGYNDFSG CEDASSVGFC GITTVEAAAS  420
SSNVVDASRN QNQTDQDFDD LHAILFNDTN LESVNQEEGK QIVNYETSVR VNFNRELIEE  480
LKFDWFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-24	ARR-B family protein