PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G18591

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

DBB

Protein Properties

Length: 311aa MW: 33226.3 Da PI: 4.8914

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G18591	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.8e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl Ro03_G18591 4 QCNVCEAAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	29.1	2.1e-09	52	92	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C +++H H Ro03_G18591 52 MPKCDICQEAVGYFFCLEDRALLCRKCDVAIHTAnslvsgH 92 799*****9*******************545566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSAS HMPKCDICQE 60 AVGYFFCLED RALLCRKCDV AIHTANSLVS GHRRFLLTGI KVGPEPNPPG SGGGVAGSSS 120 SVKSHSGSVS KFDVNNQLAE ECKVAPSSVA GMSFAGGSAA GSAPQWPMDE FLGFTDFDQS 180 FGYMDNGSSK ADCGKLGESD SSFLRSSEEE QEDYECIGQV PETSWMVPQV PSPPTASGLY 240 WPKSYQSPSD CAVFVPDVCY SEMQNSLHCQ QNGTVSKRRV LMISSSQENS RSQSPDSLAP 300 LLPTSKPCPL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	9e-59	DBB family protein