PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G17987
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 529aa    MW: 58462.2 Da    PI: 5.8219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G17987genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.64.6e-1341575262374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +e L +cA+a++++d++ +++l+++l++++s +g+p+qRl ay++e+L arla+++s +y +l+++e +   s+e l+++++++ev+P++kf+++ aN
  Ro03_G17987 157 KEMLCACAKALAENDMSTTEWLISNLRQMVSVSGEPIQRLGAYMLEGLVARLASTGSCIYTSLRCKEPA---SAELLSYMHILYEVCPYFKFGYMSAN 251
                  789*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea++ e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++R+ g+++++s   +   l  +g+rL+++Ae  +vpfef++ +  + ++++le+L 
  Ro03_G17987 252 GAIAEAMKDESRVHIIDFQIAQGSQWITLIQALATRPGGPPHIRLMGIDDSASAyaRGGGLDLVGKRLSRLAELYKVPFEFHA-AGISASEIQLEDLG 348
                  **************************************************888899999************************.7889********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+pgEalaVn++++lh+++desvs++++rd++L++vkslsPkvv++veqe+++n+++F  rf+e+++y+sa+fds+++ lpre++eri+vE+++l+re
  Ro03_G17987 349 VQPGEALAVNFAFMLHHMPDESVSIQNHRDRLLRVVKSLSPKVVTLVEQESNTNTAPFCPRFAETFSYFSAVFDSIDVALPREHKERINVEQHCLARE 446
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn++aceg er+er+e l+kW++r+ +aGF+p+pls+ +++++k+ll+ ++++ y++ee++g+l+lgW++++Lv+ +aWr
  Ro03_G17987 447 IVNIIACEGVERVERTELLSKWKSRFIMAGFSPYPLSSIINATIKTLLQSYSEK-YTLEERNGALYLGWMNQALVASCAWR 526
                  ****************************************************65.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MRATEKHGNP SVSHRFGNQP VEEPESYGCP PIHNVVIHGS HLSVQNCEQY ESSSATSTYH  60
VQSSPSSLSF SANGSPTSQP DLQSYQSSGS PINQSCLTND MGGLSHKIRE LESVLLGNES  120
DALDIYGITS EVNHNQVSSA AENWKQMMEM ISRGDLKEML CACAKALAEN DMSTTEWLIS  180
NLRQMVSVSG EPIQRLGAYM LEGLVARLAS TGSCIYTSLR CKEPASAELL SYMHILYEVC  240
PYFKFGYMSA NGAIAEAMKD ESRVHIIDFQ IAQGSQWITL IQALATRPGG PPHIRLMGID  300
DSASAYARGG GLDLVGKRLS RLAELYKVPF EFHAAGISAS EIQLEDLGVQ PGEALAVNFA  360
FMLHHMPDES VSIQNHRDRL LRVVKSLSPK VVTLVEQESN TNTAPFCPRF AETFSYFSAV  420
FDSIDVALPR EHKERINVEQ HCLAREIVNI IACEGVERVE RTELLSKWKS RFIMAGFSPY  480
PLSSIINATI KTLLQSYSEK YTLEERNGAL YLGWMNQALV ASCAWRSNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein