PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G17200

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 545aa MW: 59648.8 Da PI: 6.6733

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G17200	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	298	356	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+ gCpv+k+v+r+aed++++++tYeg+Hnh+ Ro03_G17200 298 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtGCPVRKQVQRCAEDKTILITTYEGQHNHP 356 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEPAVSDHSI HSSRIEHVLS PATADGKRVV HDELDFFADH QKGCLKDTDQ NLVLQEDMVQ 60 EKQLDTGLNL LTTYTSTSDK SSTDDGSTSL TMEYHKQTAT SELEVVQAEL GRMNVENQRL 120 RVMISQVNNN YKSLQVHLVD LMQRQQNQPA QHKMVIDESV PEEKQMIMNI VPRQFMDMGR 180 ASTVNITHHE KDELVSHSSL DMGKSNNDCS GSPPIVESMD HCKRSIHRSS TKRTSGGAED 240 SPERQEFPAG SPGWVPKKVP KLSSGDVDVD HQASEETMSM IKKARVSVRA RSEASMISDG 300 CQWRKYGQKM AKGNPCPRAY YRCTMGTGCP VRKQVQRCAE DKTILITTYE GQHNHPLPPA 360 AMAMASTTSA AASMLLSGSM PSADHHPHHA LINSSSNTFL QRTAIHHPLP NCPPSFATLS 420 ASAPFPTVTL DLTRTPATSS ENMPLHQLPN FSQNIMPLPQ VLGQALCNNE SKFSLLDSFR 480 GLDTTTNHSI LADKVSAATA AITADPNFTA ALVAAISSII GNNVHSNNNT NSTNVTTRNS 540 SDDNT

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEPAVSDHSI HSSRIEHVLS PATADGKRVV HDELDFFADH QKGCLKDTDQ NLVLQEDMVQ  60
EKQLDTGLNL LTTYTSTSDK SSTDDGSTSL TMEYHKQTAT SELEVVQAEL GRMNVENQRL  120
RVMISQVNNN YKSLQVHLVD LMQRQQNQPA QHKMVIDESV PEEKQMIMNI VPRQFMDMGR  180
ASTVNITHHE KDELVSHSSL DMGKSNNDCS GSPPIVESMD HCKRSIHRSS TKRTSGGAED  240
SPERQEFPAG SPGWVPKKVP KLSSGDVDVD HQASEETMSM IKKARVSVRA RSEASMISDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMGTGCP VRKQVQRCAE DKTILITTYE GQHNHPLPPA  360
AMAMASTTSA AASMLLSGSM PSADHHPHHA LINSSSNTFL QRTAIHHPLP NCPPSFATLS  420
ASAPFPTVTL DLTRTPATSS ENMPLHQLPN FSQNIMPLPQ VLGQALCNNE SKFSLLDSFR  480
GLDTTTNHSI LADKVSAATA AITADPNFTA ALVAAISSII GNNVHSNNNT NSTNVTTRNS  540
SDDNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-92	WRKY family protein