PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G16931
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family E2F/DP
Protein Properties Length: 365aa    MW: 40342.8 Da    PI: 10.1432
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G16931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP66.72.9e-212491171
      E2F_TDP  1 rkeksLrlltqkflklleksee..givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rk+ksL ll+++fl l+++ +     + l+++a++L    v   rRRiYDi+NVLe+++l+++k+kn ++wkg
  Ro03_G16931 24 RKQKSLSLLCSNFLGLYNRDDGatSLIGLDDAASRL---GV--VRRRIYDIVNVLESVGLLARKSKNTYTWKG 91
                 79****************966546899*********...99..9***************************98 PP
2E2F_TDP665.1e-21126211271
      E2F_TDP   2 keksLrlltqkflkllek...see.givtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  +eksL ll+q+f+kl+ +   + e + ++l+e+ak L+          +++k+RRiYDi+NVL+++nliek     + k+++rw g
  Ro03_G16931 126 REKSLALLAQNFVKLFVCsgfAGEsKSISLDEAAKLLLGVgdsqnvsVMRTKVRRIYDIANVLSSVNLIEKihtadTGKPAYRWLG 211
                  79***************97775566************877889*999999**********************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MAFSAAAAPP LESSTTKRNS SYSRKQKSLS LLCSNFLGLY NRDDGATSLI GLDDAASRLG  60
VVRRRIYDIV NVLESVGLLA RKSKNTYTWK GFGAIPNALK ELKEEGLDLT PIPTCNNNNS  120
QDETKREKSL ALLAQNFVKL FVCSGFAGES KSISLDEAAK LLLGVGDSQN VSVMRTKVRR  180
IYDIANVLSS VNLIEKIHTA DTGKPAYRWL GLNVKTDDLY SNSAPNSDRS KRRSFGTDLT  240
NVSCKRSKVA EKPMPDQGEV DESNLDGAAK ESSKSYQFGP FAPVAVPRVR KINMNKVGWE  300
SLGASYRPQY QNQALKELFS HYREAWKSWN SKLLDASSNS VLIVLLTQQR RDGSPVGMKW  360
LSSLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-99E2F/DP family protein