PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G16159
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92620.5 Da    PI: 6.465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G16159genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ro03_G16159 17 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                 6789*****************************************************97 PP
2START171.84.4e-541663732204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i  g  g+++l++++
  Ro03_G16159 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSIIPAGngGTIELIYMQ 262
                  68999*****************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S+++ +  p+   s+s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lrsl++s+ + 
  Ro03_G16159 263 TYAPTTLAAaRDFWTLRYTTTLEDGSLVVCERSLTNSTGGPTgppSASFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRSLYESSKII 360
                  *************************************99999999***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++va+l++ +
  Ro03_G16159 361 AQKMTVAALRHIR 373
                  *********9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MALVMHKDTH NQMDSSKYVR YTPEQVEALE RVYSECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLTTVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGFMKQQ  120
LHSASGTTTD NSCESVVMNG QHQQQHNPTP QHPQRDANNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNSSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR  240
CLDVLSIIPA GNGGTIELIY MQTYAPTTLA AARDFWTLRY TTTLEDGSLV VCERSLTNST  300
GGPTGPPSAS FVRAEMLPSG FLIRPCEGGG SIIHIVDHID LDAWSVPEVL RSLYESSKII  360
AQKMTVAALR HIRQIAQEAT GEIQYAGGRQ PAVLRTFSQR LCRGFNDAVN GFADDGWSLL  420
GSDGAEDVTI AINSSPNKFL GSQYNTSMFP TFGGGVLCAK ASMLLQSVPP ALLVRFLREH  480
RSEWADYGVD AYSAACLKAS PYAVPCARPG GFPSSQVILP LAPTVENEEF LEVVRLEGHA  540
FSPEDVALAR DMFLLQLCSG VDENAVGACA QLVFAPIDES FADDAPLLPS GFHVIPLDAK  600
TDGPTANRTL DLASTLEVGA NSARRVNDGD ANSYNLRSVL TIAFQFTFEN HLRDNVAAMA  660
RQYVRSVVSS VQRVAMAIAP SRLSSQMGPK SLPGSPEAHT LARWIFRSYR VHTGGELFRL  720
DSPSGDAVLK QLWNHPDAIM CCSVKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD  780
EAGRKVLCSE FSKIMHQGFA YLPAGICASS MGRPVSYEQA VAWKVVNDDD SNHCLALMFT  840
NWSFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein