PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G16037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37947.4 Da PI: 8.2242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.4e-53 | 18 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ Ro03_G16037 18 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWQLPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSTtdd 114 79****************************.88***************988899****************************************9999 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl Ro03_G16037 115 gggGSRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 150 9888888***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence |
MESTDSSTGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPVAII AEVDLYKFDP 60 WQLPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS TTDDGGGGSR 120 KVGVKKALVF YRGKPPKGIK TNWIMHEYRL IDNNTSNKPP GCHDLGNKKN SLRLDDWVLC 180 RIYKKNNTHR PMDQEDSMDD GLGSSFPLSK LHHLPPKSTT ASYAQFLDND HNFFDGMVSN 240 DGINSSGSFV PNVALANSSH PLKRGLPNLY WNDQEDEAGP SRRLQLDNSD STGNGSIATL 300 LSHLPQTPPP LHQQPMLGVS QLGGDGLFRG TPYQLPGMNW YS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-111 | NAC family protein |