PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G16035

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 352aa MW: 39508.7 Da PI: 8.5292

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G16035	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.7	7.9e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ Ro03_G16035 14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGR 109 79**************************.89***********7777799*******************************9999.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl Ro03_G16035 110 KVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MVVPATDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRKNGSAK LDEWVLCRIY KKSSSASSIQ KPMMTSVSNK 180 DQSCNGSSSE CSSQLDDVLE WLPEIQDRFF TLPRINSLKN LPQQEDNKLN LLGNLGSGNF 240 DWASLAGLNP VPEPVPNIQA QGQAQLTYNN DMYVPSIPPL CHVESPSERL GRQVEEEVQS 300 GLRTQRVDNS GFFQQNSNLF TQNFCTPIDT YGSGTRFGRV GPGFSFGGGK SE

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MVVPATDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRKNGSAK LDEWVLCRIY KKSSSASSIQ KPMMTSVSNK  180
DQSCNGSSSE CSSQLDDVLE WLPEIQDRFF TLPRINSLKN LPQQEDNKLN LLGNLGSGNF  240
DWASLAGLNP VPEPVPNIQA QGQAQLTYNN DMYVPSIPPL CHVESPSERL GRQVEEEVQS  300
GLRTQRVDNS GFFQQNSNLF TQNFCTPIDT YGSGTRFGRV GPGFSFGGGK SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-125	NAC family protein