PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G15815

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 433aa MW: 46182.2 Da PI: 8.0252

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G15815	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	6.9e-31	255	313	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Ro03_G15815 255 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 313 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MCSLSIPIGM ENYQGDLTDI LRAGAAAAAT GSSSSSPAYH SETMNSDSWQ FSSDDNQSMK 60 FSTSIAMEEE VEEARDNFGD PFSSYIRDPL LHELSSTSTG GFFSSPSSNS EMNIGVDMEA 120 ARAAPFGAHL LGHHHHPGEV DKRPCNNNIF SRMLQISPGK LGGDVAGCDS VAVLGSPRGG 180 GGIIKAGPGG VMVGSDMINA NSSKGCLLEN TGVGVQISSP RNPGIKRRKS QAKKVVCIPA 240 PAAANSRPTG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN 300 MLVITYTSEH NHPWPTQRNA LAGSTRSQPS KAGAASKTSP NSSLHQKPTS PAKEEQKAAA 360 DSMNENNNVL SPVNADPLNL LFSQCFTADE QQKGGNKAAL DPFNLFDWSG DQNTTTTNNN 420 NNVSFGHEAK RRL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MCSLSIPIGM ENYQGDLTDI LRAGAAAAAT GSSSSSPAYH SETMNSDSWQ FSSDDNQSMK  60
FSTSIAMEEE VEEARDNFGD PFSSYIRDPL LHELSSTSTG GFFSSPSSNS EMNIGVDMEA  120
ARAAPFGAHL LGHHHHPGEV DKRPCNNNIF SRMLQISPGK LGGDVAGCDS VAVLGSPRGG  180
GGIIKAGPGG VMVGSDMINA NSSKGCLLEN TGVGVQISSP RNPGIKRRKS QAKKVVCIPA  240
PAAANSRPTG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN  300
MLVITYTSEH NHPWPTQRNA LAGSTRSQPS KAGAASKTSP NSSLHQKPTS PAKEEQKAAA  360
DSMNENNNVL SPVNADPLNL LFSQCFTADE QQKGGNKAAL DPFNLFDWSG DQNTTTTNNN  420
NNVSFGHEAK RRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-71	WRKY family protein