PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15810
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 293aa    MW: 32984.2 Da    PI: 6.036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15810genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09173215855
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + r RR+ri ++ +eL +l+P+       K++ ae+L+ A +YIk Lq
  Ro03_G15810 173 AARERRRRITEKTNELGKLVPSG-----SKMNTAEMLQAAYKYIKFLQ 215
                  6699******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MAAMSSTTFC SDWGSFQLLN NNPNPNPNPS PDYDQMFSFQ FQQDQLAAAS ILGLDYSFSL  60
DPNPLLLSQT FFNDQELLPL DDHEYYYHDE YPKRQKTHQQ FNSSFNGFVP NQSMLPEFVQ  120
PQLPLPPPEI QIQQQPAAQL YANCGLSNKD ISTAAKMKAG SNGGVSLSPQ SIAARERRRR  180
ITEKTNELGK LVPSGSKMNT AEMLQAAYKY IKFLQAQVGM LKLMDSIQEN KGERLHNQEG  240
FQVLASPIVQ EKLYSEEKCL VSKEFVETLA NNHGIQSKPL LKDNIAKLLR NNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-23bHLH family protein